Genomic landscape of the individual host response and outcomes in sepsis: a prospective cohort study
Davenport, Emma E, Burnham, Katie L, Radhakrishnan, Jayachandran, Humburg, Peter, Hutton, Paula, Mills, Tara C, Rautanen, Anna, Gordon, Anthony C, Garrard, Christopher, Hill, Adrian V S, Hinds, Charles J, Knight, Julian C
Published in The lancet respiratory medicine (01.04.2016)
Published in The lancet respiratory medicine (01.04.2016)
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Neutrophils and emergency granulopoiesis drive immune suppression and an extreme response endotype during sepsis
Kwok, Andrew J, Allcock, Alice, Ferreira, Ricardo C, Cano-Gamez, Eddie, Smee, Madeleine, Burnham, Katie L, Zurke, Yasemin-Xiomara, McKechnie, Stuart, Mentzer, Alexander J, Monaco, Claudia, Udalova, Irina A, Hinds, Charles J, Todd, John A, Davenport, Emma E, Knight, Julian C
Published in Nature immunology (01.05.2023)
Published in Nature immunology (01.05.2023)
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A community approach to mortality prediction in sepsis via gene expression analysis
Sweeney, Timothy E, Perumal, Thanneer M, Henao, Ricardo, Nichols, Marshall, Howrylak, Judith A, Choi, Augustine M, Bermejo-Martin, Jesús F, Almansa, Raquel, Tamayo, Eduardo, Davenport, Emma E, Burnham, Katie L, Hinds, Charles J, Knight, Julian C, Woods, Christopher W, Kingsmore, Stephen F, Ginsburg, Geoffrey S, Wong, Hector R, Parnell, Grant P, Tang, Benjamin, Moldawer, Lyle L, Moore, Frederick E, Omberg, Larsson, Khatri, Purvesh, Tsalik, Ephraim L, Mangravite, Lara M, Langley, Raymond J
Published in Nature communications (15.02.2018)
Published in Nature communications (15.02.2018)
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Shared and Distinct Aspects of the Sepsis Transcriptomic Response to Fecal Peritonitis and Pneumonia
Burnham, Katie L, Davenport, Emma E, Radhakrishnan, Jayachandran, Humburg, Peter, Gordon, Anthony C, Hutton, Paula, Svoren-Jabalera, Eduardo, Garrard, Christopher, Hill, Adrian V S, Hinds, Charles J, Knight, Julian C
Published in American journal of respiratory and critical care medicine (01.08.2017)
Published in American journal of respiratory and critical care medicine (01.08.2017)
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IMPACT: Genomic Annotation of Cell-State-Specific Regulatory Elements Inferred from the Epigenome of Bound Transcription Factors
Amariuta, Tiffany, Luo, Yang, Gazal, Steven, Davenport, Emma E., van de Geijn, Bryce, Ishigaki, Kazuyoshi, Westra, Harm-Jan, Teslovich, Nikola, Okada, Yukinori, Yamamoto, Kazuhiko, Price, Alkes L., Raychaudhuri, Soumya
Published in American journal of human genetics (02.05.2019)
Published in American journal of human genetics (02.05.2019)
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Classification of patients with sepsis according to blood genomic endotype: a prospective cohort study
Scicluna, Brendon P, van Vught, Lonneke A, Zwinderman, Aeilko H, Wiewel, Maryse A, Davenport, Emma E, Burnham, Katie L, Nürnberg, Peter, Schultz, Marcus J, Horn, Janneke, Cremer, Olaf L, Bonten, Marc J, Hinds, Charles J, Wong, Hector R, Knight, Julian C, van der Poll, Tom
Published in The lancet respiratory medicine (01.10.2017)
Published in The lancet respiratory medicine (01.10.2017)
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Transcriptional reprogramming from innate immune functions to a pro-thrombotic signature by monocytes in COVID-19
Maher, Allison K, Burnham, Katie L, Jones, Emma M, Tan, Michelle M H, Saputil, Rocel C, Baillon, Laury, Selck, Claudia, Giang, Nicolas, Argüello, Rafael, Pillay, Clio, Thorley, Emma, Short, Charlotte-Eve, Quinlan, Rachael, Barclay, Wendy S, Cooper, Nichola, Taylor, Graham P, Davenport, Emma E, Dominguez-Villar, Margarita
Published in Nature communications (26.12.2022)
Published in Nature communications (26.12.2022)
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Structure of the Ire1 autophosphorylation complex and implications for the unfolded protein response
Ali, Maruf M U, Bagratuni, Tina, Davenport, Emma L, Nowak, Piotr R, Silva-Santisteban, M Cris, Hardcastle, Anthea, McAndrews, Craig, Rowlands, Martin G, Morgan, Gareth J, Aherne, Wynne, Collins, Ian, Davies, Faith E, Pearl, Laurence H
Published in The EMBO journal (02.03.2011)
Published in The EMBO journal (02.03.2011)
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Genome-wide association study of survival from sepsis due to pneumonia: an observational cohort study
Rautanen, Anna, Mills, Tara C, Gordon, Anthony C, Hutton, Paula, Steffens, Michael, Nuamah, Rosamond, Chiche, Jean-Daniel, Parks, Tom, Chapman, Stephen J, Davenport, Emma E, Elliott, Katherine S, Bion, Julian, Lichtner, Peter, Meitinger, Thomas, Wienker, Thomas F, Caulfield, Mark J, Mein, Charles, Bloos, Frank, Bobek, Ilona, Cotogni, Paolo, Sramek, Vladimir, Sarapuu, Silver, Kobilay, Makbule, Ranieri, V Marco, Rello, Jordi, Sirgo, Gonzalo, Weiss, Yoram G, Russwurm, Stefan, Schneider, E Marion, Reinhart, Konrad, Holloway, Paul A H, Knight, Julian C, Garrard, Chris S, Russell, James A, Walley, Keith R, Stüber, Frank, Hill, Adrian V S, Hinds, Charles J
Published in The lancet respiratory medicine (01.01.2015)
Published in The lancet respiratory medicine (01.01.2015)
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An atlas of genetic scores to predict multi-omic traits
Xu, Yu, Ritchie, Scott C, Liang, Yujian, Timmers, Paul R H J, Pietzner, Maik, Lannelongue, Loïc, Lambert, Samuel A, Tahir, Usman A, May-Wilson, Sebastian, Foguet, Carles, Johansson, Åsa, Surendran, Praveen, Nath, Artika P, Persyn, Elodie, Peters, James E, Oliver-Williams, Clare, Deng, Shuliang, Prins, Bram, Luan, Jian'an, Bomba, Lorenzo, Soranzo, Nicole, Di Angelantonio, Emanuele, Pirastu, Nicola, Tai, E Shyong, van Dam, Rob M, Parkinson, Helen, Davenport, Emma E, Paul, Dirk S, Yau, Christopher, Gerszten, Robert E, Mälarstig, Anders, Danesh, John, Sim, Xueling, Langenberg, Claudia, Wilson, James F, Butterworth, Adam S, Inouye, Michael
Published in Nature (London) (06.04.2023)
Published in Nature (London) (06.04.2023)
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Discovering in vivo cytokine-eQTL interactions from a lupus clinical trial
Davenport, Emma E, Amariuta, Tiffany, Gutierrez-Arcelus, Maria, Slowikowski, Kamil, Westra, Harm-Jan, Luo, Yang, Shen, Ciyue, Rao, Deepak A, Zhang, Ying, Pearson, Stephen, von Schack, David, Beebe, Jean S, Bing, Nan, John, Sally, Vincent, Michael S, Zhang, Baohong, Raychaudhuri, Soumya
Published in Genome Biology (19.10.2018)
Published in Genome Biology (19.10.2018)
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An immune dysfunction score for stratification of patients with acute infection based on whole-blood gene expression
Cano-Gamez, Eddie, Burnham, Katie L, Goh, Cyndi, Allcock, Alice, Overend, Lauren, Kwok, Andrew, Smith, David A, Peters-Sengers, Hessel, Scicluna, Brendon P, van der Poll, Tom, Gordon, Anthony C, Hinds, Charles J, Davenport, Emma E, Knight, Julian C, Webster, Nigel, Galley, Helen, Hall, Sally, Addison, Jenni, Roughton, Sian, Tennant, Heather, Guleri, Achyut, Arawwawala, Dilshan, Durcan, John, Short, Alasdair, Swan, Karen, Williams, Sarah, Smolen, Susan, Mitchell-Inwang, Christine, Templeton, Maie, Venatesh, Pyda, Ward, Geraldine, McCauley, Marie, Higham, Charley, Grier, Sally, Brett, Stephen, Kitson, David, Wilson, Robert, Mountford, Laura, Hall, Peter, Hewlett, Jackie, McKechnie, Stuart, Millo, Julian, Young, Duncan, Smiths, Alex, Faras-Arraya, Roser, Raymode, Parizade, Thompson, Jonathan, Kazembe, Sandra, Rich, Natalie, Andreou, Prem, Roberts, Emma, Rosbergen, Melissa, Cuesta, Jeronimo Moreno, Bion, Julian, Millar, Joanne, Perry, Elsa Jane, Willis, Heather, Carrera, Ronald, Wilde, Jude, Nilson, Annette, Lees, Sarah, Kapila, Atul, Jacques, Nicola, Brown, Abby, Krige, Anton, Bland, Martin, Bullock, Lynne, Harrison, Donna, Mills, Gary, Armitage, Kelsey, Laha, Shond, Baldwin, Jacqueline, Walsh, Angela, Doherty, Nicola, Walsh, Helen, Calder, Verity, Swan, Catherine, Higgins, David, Andrews, Sarah, Hind, Charles, Watson, D, Purdy, Alice, Ochelli-Okpue, Adaeze, Bonner, Stephen, Hugil, Keith, Goodridge, Victoria, Cawthor, Louisa, Pahary, Sheik, Bellingan, Geoffrey, Marshall, Richard, Montgomery, Hugh, Bercades, Georgia, Boluda, Susan, Bentley, Andrew, Jefferies, Fiona, Davenport, Emma, Radhakrishnan, Jayachandran, Mi, Yuxin, Allcock, Alice, Goh, Cyndi
Published in Science translational medicine (02.11.2022)
Published in Science translational medicine (02.11.2022)
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Application of whole genome and RNA sequencing to investigate the genomic landscape of common variable immunodeficiency disorders
van Schouwenburg, Pauline A, Davenport, Emma E, Kienzler, Anne-Kathrin, Marwah, Ishita, Wright, Benjamin, Lucas, Mary, Malinauskas, Tomas, Martin, Hilary C, Lockstone, Helen E, Cazier, Jean-Baptiste, Chapel, Helen M, Knight, Julian C, Patel, Smita Y
Published in Clinical immunology (Orlando, Fla.) (01.10.2015)
Published in Clinical immunology (Orlando, Fla.) (01.10.2015)
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Microarray analysis demonstrates up-regulation of the endothelin-1 gene with compensatory down-regulation of the ETA receptor gene in human portal vein
Owen, Nicola E., Williams, Thomas L., Maguire, Janet J., Kuc, Rhoda E., Davenport, Emma E., Davenport, Anthony P.
Published in Bioscience reports (31.07.2024)
Published in Bioscience reports (31.07.2024)
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Misexpression of inactive genes in whole blood is associated with nearby rare structural variants
Vanderstichele, Thomas, Burnham, Katie L., de Klein, Niek, Tardaguila, Manuel, Howell, Brittany, Walter, Klaudia, Kundu, Kousik, Koeppel, Jonas, Lee, Wanseon, Tokolyi, Alex, Persyn, Elodie, Nath, Artika P., Marten, Jonathan, Petrovski, Slavé, Roberts, David J., Di Angelantonio, Emanuele, Danesh, John, Berton, Alix, Platt, Adam, Butterworth, Adam S., Soranzo, Nicole, Parts, Leopold, Inouye, Michael, Paul, Dirk S., Davenport, Emma E.
Published in American journal of human genetics (08.08.2024)
Published in American journal of human genetics (08.08.2024)
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Patient stratification using plasma cytokines and their regulators in sepsis: relationship to outcomes, treatment effect and leucocyte transcriptomic subphenotypes
Antcliffe, David Benjamin, Mi, Yuxin, Santhakumaran, Shalini, Burnham, Katie L, Prevost, A Toby, Ward, Josie K, Marshall, Timothy J, Bradley, Claire, Al-Beidh, Farah, Hutton, Paula, McKechnie, Stuart, Davenport, Emma E, Hinds, Charles J, O'Kane, Cecilia M, McAuley, Daniel Francis, Shankar-Hari, Manu, Gordon, Anthony C, Knight, Julian C
Published in Thorax (01.06.2024)
Published in Thorax (01.06.2024)
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Interactions Between Genome‐Wide Genetic Factors and Smoking Influencing Risk of Systemic Lupus Erythematosus
Cui, Jing, Raychaudhuri, Soumya, Karlson, Elizabeth W., Speyer, Cameron, Malspeis, Susan, Guan, Hongshu, Sparks, Jeffrey A., Ni, Hongru, Liu, Xinyi, Stevens, Emma, Williams, Jessica N., Davenport, Emma E., Knevel, Rachel, Costenbader, Karen H.
Published in Arthritis & rheumatology (Hoboken, N.J.) (01.11.2020)
Published in Arthritis & rheumatology (Hoboken, N.J.) (01.11.2020)
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Inducible apelin receptor knockdown reduces differentiation efficiency and contractility of hESC-derived cardiomyocytes
Macrae, Robyn G C, Colzani, Maria T, Williams, Thomas L, Bayraktar, Semih, Kuc, Rhoda E, Pullinger, Anna L, Bernard, William G, Robinson, Emma L, Davenport, Emma E, Maguire, Janet J, Sinha, Sanjay, Davenport, Anthony P
Published in Cardiovascular research (31.03.2023)
Published in Cardiovascular research (31.03.2023)
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Heat shock protein inhibition is associated with activation of the unfolded protein response pathway in myeloma plasma cells
Davenport, Emma L., Moore, Hannah E., Dunlop, Alan S., Sharp, Swee Y., Workman, Paul, Morgan, Gareth J., Davies, Faith E.
Published in Blood (01.10.2007)
Published in Blood (01.10.2007)
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