Beware the Jaccard: the choice of similarity measure is important and non-trivial in genomic colocalisation analysis
Salvatore, Stefania, Dagestad Rand, Knut, Grytten, Ivar, Ferkingstad, Egil, Domanska, Diana, Holden, Lars, Gheorghe, Marius, Mathelier, Anthony, Glad, Ingrid, Kjetil Sandve, Geir
Published in Briefings in bioinformatics (01.09.2020)
Published in Briefings in bioinformatics (01.09.2020)
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Journal Article
Ten simple rules for quick and dirty scientific programming
Balaban, Gabriel, Grytten, Ivar, Rand, Knut Dagestad, Scheffer, Lonneke, Sandve, Geir Kjetil
Published in PLoS computational biology (11.03.2021)
Published in PLoS computational biology (11.03.2021)
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Journal Article
Graph Peak Caller: Calling ChIP-seq peaks on graph-based reference genomes
Grytten, Ivar, Rand, Knut D, Nederbragt, Alexander J, Storvik, Geir O, Glad, Ingrid K, Sandve, Geir K
Published in PLoS computational biology (01.02.2019)
Published in PLoS computational biology (01.02.2019)
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Journal Article
simAIRR: simulation of adaptive immune repertoires with realistic receptor sequence sharing for benchmarking of immune state prediction methods
Kanduri, Chakravarthi, Scheffer, Lonneke, Pavlović, Milena, Rand, Knut Dagestad, Chernigovskaya, Maria, Pirvandy, Oz, Yaari, Gur, Greiff, Victor, Sandve, Geir K
Published in Gigascience (01.01.2023)
Published in Gigascience (01.01.2023)
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Journal Article
GSuite HyperBrowser: integrative analysis of dataset collections across the genome and epigenome
Simovski, Boris, Vodák, Daniel, Gundersen, Sveinung, Domanska, Diana, Azab, Abdulrahman, Holden, Lars, Holden, Marit, Grytten, Ivar, Rand, Knut, Drabløs, Finn, Johansen, Morten, Mora, Antonio, Lund-Andersen, Christin, Fromm, Bastian, Eskeland, Ragnhild, Gabrielsen, Odd Stokke, Ferkingstad, Egil, Nakken, Sigve, Bengtsen, Mads, Nederbragt, Alexander Johan, Thorarensen, Hildur Sif, Akse, Johannes Andreas, Glad, Ingrid, Hovig, Eivind, Sandve, Geir Kjetil
Published in Gigascience (01.07.2017)
Published in Gigascience (01.07.2017)
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Journal Article
Beware the Jaccard: the choice of metric is important and non-trivial in genomic colocalisation analysis
Salvatore, Stefania, Knut Dagestad Rand, Grytten, Ivar, Ferkingstad, Egil, Domanska, Diana Eva, Holden, Lars, Gheorghe, Marius, Mathelier, Anthony, Glad, Ingrid, Sandve, Geir Kjetil
Published in bioRxiv (04.03.2019)
Published in bioRxiv (04.03.2019)
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Paper
GSuite HyperBrowser: integrative analysis of dataset collections across the genome and epigenome
Simovski, Boris, Vodak, Daniel, Gundersen, Sveinung, Domanska, Diana, Azab, Abdulrahman, Holden, Lars, Holden, Marit, Grytten, Ivar, Knut Dagestad Rand, Drablos, Finn, Johansen, Morten, Mora, Antonio, Lund-Andersen, Christin, Fromm, Bastian, Eskeland, Ragnhild, Odd Stokke Gabrielsen, Nakken, Sigve, Bengtsen, Mads, Nederbragt, Alexander Johan, Thorarensen, Hildur Sif, Akse, Johannes Andreas, Glad, Ingrid, Hovig, Eivind, Sandve, Geir Kjetil
Published in bioRxiv (03.08.2016)
Published in bioRxiv (03.08.2016)
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Paper