Insights to HIV-1 coreceptor usage by estimating HLA adaptation with Bayesian generalized linear mixed models
Hake, Anna, Germann, Anja, de Beer, Corena, Thielen, Alexander, Däumer, Martin, Preiser, Wolfgang, von Briesen, Hagen, Pfeifer, Nico
Published in PLoS computational biology (01.12.2023)
Published in PLoS computational biology (01.12.2023)
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Journal Article
Failure of Dolutegravir First-Line ART with Selection of Virus Carrying R263K and G118R
Lübke, Nadine, Jensen, Björn, Hüttig, Falk, Feldt, Torsten, Walker, Andreas, Thielen, Alexander, Däumer, Martin, Obermeier, Martin, Kaiser, Rolf, Knops, Elena, Heger, Eva, Sierra, Saleta, Oette, Mark, Lengauer, Thomas, Timm, Jörg, Häussinger, Dieter
Published in The New England journal of medicine (29.08.2019)
Published in The New England journal of medicine (29.08.2019)
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Journal Article
Robustness, sensitivity and reproducibility of eDNA metabarcoding as an environmental biomonitoring tool in coastal salmon aquaculture – An inter-laboratory study
Dully, Verena, Balliet, Heinrich, Frühe, Larissa, Däumer, Martin, Thielen, Alexander, Gallie, Sheena, Berrill, Iain, Stoeck, Thorsten
Published in Ecological indicators (01.02.2021)
Published in Ecological indicators (01.02.2021)
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Journal Article
Read length versus depth of coverage for viral quasispecies reconstruction
Zagordi, Osvaldo, Däumer, Martin, Beisel, Christian, Beerenwinkel, Niko
Published in PloS one (03.10.2012)
Published in PloS one (03.10.2012)
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Journal Article
Full-length haplotype reconstruction to infer the structure of heterogeneous virus populations
Giallonardo, Francesca Di, Töpfer, Armin, Rey, Melanie, Prabhakaran, Sandhya, Duport, Yannick, Leemann, Christine, Schmutz, Stefan, Campbell, Nottania K, Joos, Beda, Lecca, Maria Rita, Patrignani, Andrea, Däumer, Martin, Beisel, Christian, Rusert, Peter, Trkola, Alexandra, Günthard, Huldrych F, Roth, Volker, Beerenwinkel, Niko, Metzner, Karin J
Published in Nucleic acids research (18.08.2014)
Published in Nucleic acids research (18.08.2014)
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Journal Article
Deep Sequencing Reveals Mutagenic Effects of Ribavirin during Monotherapy of Hepatitis C Virus Genotype 1-Infected Patients
Dietz, Julia, Schelhorn, Sven-Eric, Fitting, Daniel, Mihm, Ulrike, Susser, Simone, Welker, Martin-Walter, Füller, Caterina, Däumer, Martin, Teuber, Gerlinde, Wedemeyer, Heiner, Berg, Thomas, Lengauer, Thomas, Zeuzem, Stefan, Herrmann, Eva, Sarrazin, Christoph
Published in Journal of Virology (01.06.2013)
Published in Journal of Virology (01.06.2013)
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Journal Article
Impact of Valency of a Glycoprotein B-Specific Monoclonal Antibody on Neutralization of Herpes Simplex Virus
KRAWCZYK, Adalbert, KRAUSS, Jürgen, EIS-HÜBINGER, Anna M, DÄUMER, Martin P, SCHWARZENBACHER, Robert, DITTMER, Ulf, SCHNEWEIS, Karl E, JÄGER, Dirk, ROGGENDORF, Michael, ARNDT, Michaela A. E
Published in Journal of Virology (01.02.2011)
Published in Journal of Virology (01.02.2011)
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Journal Article
Kinetics of hepatitis B surface antigen quasispecies during REP 2139‐Ca therapy in HBeAg‐positive chronic HBV infection
Usman, Zainab, Mijočević, Hrvoje, Karimzadeh, Hadi, Däumer, Martin, Al‐Mathab, Mamun, Bazinet, Michel, Frishman, Dmitrij, Vaillant, Andrew, Roggendorf, Michael
Published in Journal of viral hepatitis (01.12.2019)
Published in Journal of viral hepatitis (01.12.2019)
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Journal Article
Predicting HIV coreceptor usage on the basis of genetic and clinical covariates
TO BIAS SING, LOW, Andrew J, HARRIGAN, P. Richard, BEERENWINKEL, Niko, SANDER, Oliver, CHEUNG, Peter K, DOMINGUES, Francisco S, BÜCH, Joachim, DÄUMER, Martin, KAISER, Rolf, LENGAUER, Thomas
Published in Antiviral therapy (01.01.2007)
Published in Antiviral therapy (01.01.2007)
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Journal Article
Prevalence of minor variants of HIV strains at reverse transcriptase position 103 in therapy-naïve patients and their impact on the virological failure
Balduin, Melanie, Oette, Mark, Däumer, Martin P, Hoffmann, Daniel, Pfister, Herbert J, Kaiser, Rolf
Published in Journal of clinical virology (01.05.2009)
Published in Journal of clinical virology (01.05.2009)
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Journal Article
HIV-1 tropism testing in subjects achieving undetectable HIV-1 RNA: diagnostic accuracy, viral evolution and compartmentalization
Pou, Christian, Codoñer, Francisco M, Thielen, Alexander, Bellido, Rocío, Pérez-Álvarez, Susana, Cabrera, Cecilia, Dalmau, Judith, Curriu, Marta, Lie, Yolanda, Noguera-Julian, Marc, Puig, Jordi, Martínez-Picado, Javier, Blanco, Julià, Coakley, Eoin, Däumer, Martin, Clotet, Bonaventura, Paredes, Roger
Published in PloS one (01.08.2013)
Published in PloS one (01.08.2013)
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Journal Article
Reactivation of an occult hepatitis B virus escape mutant in an anti-HBs positive, anti-HBc negative lymphoma patient
Awerkiew, Sabine, Däumer, Martin, Reiser, Marcel, Wend, Ulrike C, Pfister, Herbert, Kaiser, Rolf, Willems, Wulf R, Gerlich, Wolfram H
Published in Journal of clinical virology (01.01.2007)
Published in Journal of clinical virology (01.01.2007)
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Journal Article
In-depth analysis of G-to-A hypermutation rate in HIV-1 env DNA induced by endogenous APOBEC3 proteins using massively parallel sequencing
Knoepfel, Stefanie A., Di Giallonardo, Francesca, Däumer, Martin, Thielen, Alexander, Metzner, Karin J.
Published in Journal of virological methods (01.02.2011)
Published in Journal of virological methods (01.02.2011)
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Journal Article
Compensatory mutations at the HIV cleavage sites p7/p1 and p1/p6-gag in therapy-naive and therapy-experienced patients
Verheyen, Jens, Litau, Elena, Sing, Tobias, Däumer, Martin, Balduin, Melanie, Oette, Mark, Fätkenheuer, Gerd, Rockstroh, Jürgen K, Schuldenzucker, Ulrike, Hoffmann, Daniel, Pfister, Herbert, Kaiser, Rolf
Published in Antiviral therapy (01.01.2006)
Published in Antiviral therapy (01.01.2006)
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Journal Article
Rapid Selection of Sotrovimab Escape Variants in Severe Acute Respiratory Syndrome Coronavirus 2 Omicron-Infected Immunocompromised Patients
Gliga, Smaranda, Lübke, Nadine, Killer, Alexander, Gruell, Henning, Walker, Andreas, Dilthey, Alexander T, Thielen, Alexander, Lohr, Carolin, Flaßhove, Charlotte, Krieg, Sarah, Pereira, Joanna Ventura, Seraphin, Tobias Paul, Zaufel, Alex, Däumer, Martin, Orth, Hans-Martin, Feldt, Torsten, Bode, Johannes G, Klein, Florian, Timm, Jörg, Luedde, Tom, Jensen, Björn-Erik Ole
Published in Clinical infectious diseases (08.02.2023)
Published in Clinical infectious diseases (08.02.2023)
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Journal Article
Frequent detection of cell-associated HIV-1 RNA in patients with plasma viral load <50 copies/ml
Kupfer, Bernd, Matz, Bertfried, Däumer, Martin P, Roden, Fabienne, Rockstroh, Jürgen K, Qurishi, Nazifa, Spengler, Ulrich, Kaiser, Rolf
Published in Journal of medical virology (01.10.2007)
Published in Journal of medical virology (01.10.2007)
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Journal Article
The natural history of multiple sclerosis, a geographically based study 10: relapses and long-term disability
Scalfari, Antonio, Neuhaus, Anneke, Degenhardt, Alexandra, Rice, George P., Muraro, Paolo A., Daumer, Martin, Ebers, George C.
Published in Brain (London, England : 1878) (01.07.2010)
Published in Brain (London, England : 1878) (01.07.2010)
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Journal Article
Prediction of HIV-1 coreceptor usage (tropism) by sequence analysis using a genotypic approach
Sierra, Saleta, Kaiser, Rolf, Lübke, Nadine, Thielen, Alexander, Schuelter, Eugen, Heger, Eva, Däumer, Martin, Reuter, Stefan, Esser, Stefan, Fätkenheuer, Gerd, Pfister, Herbert, Oette, Mark, Lengauer, Thomas
Published in Journal of visualized experiments (01.12.2011)
Published in Journal of visualized experiments (01.12.2011)
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Journal Article
Selective Pressures of HLA Genotypes and Antiviral Therapy on Human Immunodeficiency Virus Type 1 Sequence Mutation at a Population Level
Ahlenstiel, Golo, Roomp, Kirsten, Däumer, Martin, Nattermann, Jacob, Vogel, Martin, Rockstroh, Jürgen K, Beerenwinkel, Niko, Kaiser, Rolf, Nischalke, Hans-Dieter, Sauerbruch, Tilman, Lengauer, Thomas, Spengler, Ulrich
Published in Clinical and Vaccine Immunology (01.10.2007)
Published in Clinical and Vaccine Immunology (01.10.2007)
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Journal Article