VarDict: a novel and versatile variant caller for next-generation sequencing in cancer research
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Published in Nucleic acids research (20.06.2016)
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Published in Nature communications (14.11.2019)
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Validation of genomic and transcriptomic models of homologous recombination deficiency in a real-world pan-cancer cohort
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Published in BMC cancer (28.05.2022)
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Published in Nature reviews. Cancer (01.05.2016)
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Published in Cancer research (Chicago, Ill.) (15.03.2010)
Published in Cancer research (Chicago, Ill.) (15.03.2010)
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A statistical framework for assessing pharmacological responses and biomarkers using uncertainty estimates
Wang, Dennis, Hensman, James, Kutkaite, Ginte, Toh, Tzen S, Galhoz, Ana, Dry, Jonathan R, Saez-Rodriguez, Julio, Garnett, Mathew J, Menden, Michael P, Dondelinger, Frank
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Published in eLife (04.12.2020)
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The landscape of therapeutic vulnerabilities in EGFR inhibitor osimertinib drug tolerant persister cells
Criscione, Steven W., Martin, Matthew J., Oien, Derek B., Gorthi, Aparna, Miragaia, Ricardo J., Zhang, Jingwen, Chen, Huawei, Karl, Daniel L., Mendler, Kerrin, Markovets, Aleksandra, Gagrica, Sladjana, Delpuech, Oona, Dry, Jonathan R., Grondine, Michael, Hattersley, Maureen M., Urosevic, Jelena, Floc’h, Nicolas, Drew, Lisa, Yao, Yi, Smith, Paul D.
Published in NPJ precision oncology (27.12.2022)
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Comparative analysis of primary versus relapse/refractory DLBCL identifies shifts in mutation spectrum
Greenawalt, Danielle M, Liang, Winnie S, Saif, Sakina, Johnson, Justin, Todorov, Petar, Dulak, Austin, Enriquez, Daniel, Halperin, Rebecca, Ahmed, Ambar, Saveliev, Vladislav, Carpten, John, Craig, David, Barrett, J Carl, Dougherty, Brian, Zinda, Michael, Fawell, Stephen, Dry, Jonathan R, Byth, Kate
Published in Oncotarget (21.11.2017)
Published in Oncotarget (21.11.2017)
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Author Correction: Network-driven cancer cell avatars for combination discovery and biomarker identification for DNA damage response inhibitors
Papp, Orsolya, Jordán, Viktória, Hetey, Szabolcs, Balázs, Róbert, Kaszás, Valér, Bartha, Árpád, Ordasi, Nóra N., Kamp, Sebestyén, Farkas, Bálint, Mettetal, Jerome, Dry, Jonathan R., Young, Duncan, Sidders, Ben, Bulusu, Krishna C., Veres, Daniel V.
Published in NPJ systems biology and applications (08.08.2024)
Published in NPJ systems biology and applications (08.08.2024)
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Network-driven cancer cell avatars for combination discovery and biomarker identification for DNA damage response inhibitors
Papp, Orsolya, Jordán, Viktória, Hetey, Szabolcs, Balázs, Róbert, Kaszás, Valér, Bartha, Árpád, Ordasi, Nóra N., Kamp, Sebestyén, Farkas, Bálint, Mettetal, Jerome, Dry, Jonathan R., Young, Duncan, Sidders, Ben, Bulusu, Krishna C., Veres, Daniel V.
Published in NPJ systems biology and applications (21.06.2024)
Published in NPJ systems biology and applications (21.06.2024)
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Sale, Matthew J., Balmanno, Kathryn, Saxena, Jayeta, Ozono, Eiko, Wojdyla, Katarzyna, McIntyre, Rebecca E., Gilley, Rebecca, Woroniuk, Anna, Howarth, Karen D., Hughes, Gareth, Dry, Jonathan R., Arends, Mark J., Caro, Pilar, Oxley, David, Ashton, Susan, Adams, David J., Saez-Rodriguez, Julio, Smith, Paul D., Cook, Simon J.
Published in Nature communications (02.05.2019)
Published in Nature communications (02.05.2019)
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RNA-Seq Differentiates Tumour and Host mRNA Expression Changes Induced by Treatment of Human Tumour Xenografts with the VEGFR Tyrosine Kinase Inhibitor Cediranib
Bradford, James R, Farren, Matthew, Powell, Steve J, Runswick, Sarah, Weston, Susie L, Brown, Helen, Delpuech, Oona, Wappett, Mark, Smith, Neil R, Carr, T Hedley, Dry, Jonathan R, Gibson, Neil J, Barry, Simon T
Published in PloS one (19.06.2013)
Published in PloS one (19.06.2013)
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Identification of Intrinsic Drug Resistance and Its Biomarkers in High-Throughput Pharmacogenomic and CRISPR Screens
Ayestaran, Iñigo, Galhoz, Ana, Spiegel, Elmar, Sidders, Ben, Dry, Jonathan R., Dondelinger, Frank, Bender, Andreas, McDermott, Ultan, Iorio, Francesco, Menden, Michael P.
Published in Patterns (New York, N.Y.) (14.08.2020)
Published in Patterns (New York, N.Y.) (14.08.2020)
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