The SEED and the Rapid Annotation of microbial genomes using Subsystems Technology (RAST)
Overbeek, Ross, Olson, Robert, Pusch, Gordon D, Olsen, Gary J, Davis, James J, Disz, Terry, Edwards, Robert A, Gerdes, Svetlana, Parrello, Bruce, Shukla, Maulik, Vonstein, Veronika, Wattam, Alice R, Xia, Fangfang, Stevens, Rick
Published in Nucleic acids research (01.01.2014)
Published in Nucleic acids research (01.01.2014)
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Journal Article
PATRIC, the bacterial bioinformatics database and analysis resource
Wattam, Alice R, Abraham, David, Dalay, Oral, Disz, Terry L, Driscoll, Timothy, Gabbard, Joseph L, Gillespie, Joseph J, Gough, Roger, Hix, Deborah, Kenyon, Ronald, Machi, Dustin, Mao, Chunhong, Nordberg, Eric K, Olson, Robert, Overbeek, Ross, Pusch, Gordon D, Shukla, Maulik, Schulman, Julie, Stevens, Rick L, Sullivan, Daniel E, Vonstein, Veronika, Warren, Andrew, Will, Rebecca, Wilson, Meredith J C, Yoo, Hyun Seung, Zhang, Chengdong, Zhang, Yan, Sobral, Bruno W
Published in Nucleic acids research (01.01.2014)
Published in Nucleic acids research (01.01.2014)
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Journal Article
RASTtk: a modular and extensible implementation of the RAST algorithm for building custom annotation pipelines and annotating batches of genomes
Brettin, Thomas, Davis, James J, Disz, Terry, Edwards, Robert A, Gerdes, Svetlana, Olsen, Gary J, Olson, Robert, Overbeek, Ross, Parrello, Bruce, Pusch, Gordon D, Shukla, Maulik, Thomason, 3rd, James A, Stevens, Rick, Vonstein, Veronika, Wattam, Alice R, Xia, Fangfang
Published in Scientific reports (10.02.2015)
Published in Scientific reports (10.02.2015)
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Journal Article
Improvements to PATRIC, the all-bacterial Bioinformatics Database and Analysis Resource Center
Wattam, Alice R, Davis, James J, Assaf, Rida, Boisvert, Sébastien, Brettin, Thomas, Bun, Christopher, Conrad, Neal, Dietrich, Emily M, Disz, Terry, Gabbard, Joseph L, Gerdes, Svetlana, Henry, Christopher S, Kenyon, Ronald W, Machi, Dustin, Mao, Chunhong, Nordberg, Eric K, Olsen, Gary J, Murphy-Olson, Daniel E, Olson, Robert, Overbeek, Ross, Parrello, Bruce, Pusch, Gordon D, Shukla, Maulik, Vonstein, Veronika, Warren, Andrew, Xia, Fangfang, Yoo, Hyunseung, Stevens, Rick L
Published in Nucleic acids research (04.01.2017)
Published in Nucleic acids research (04.01.2017)
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Journal Article
Accessing the SEED genome databases via Web services API: tools for programmers
Disz, Terry, Akhter, Sajia, Cuevas, Daniel, Olson, Robert, Overbeek, Ross, Vonstein, Veronika, Stevens, Rick, Edwards, Robert A
Published in BMC bioinformatics (14.06.2010)
Published in BMC bioinformatics (14.06.2010)
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Journal Article
PATRIC as a unique resource for studying antimicrobial resistance
Antonopoulos, Dionysios A, Assaf, Rida, Aziz, Ramy Karam, Brettin, Thomas, Bun, Christopher, Conrad, Neal, Davis, James J, Dietrich, Emily M, Disz, Terry, Gerdes, Svetlana, Kenyon, Ronald W, Machi, Dustin, Mao, Chunhong, Murphy-Olson, Daniel E, Nordberg, Eric K, Olsen, Gary J, Olson, Robert, Overbeek, Ross, Parrello, Bruce, Pusch, Gordon D, Santerre, John, Shukla, Maulik, Stevens, Rick L, VanOeffelen, Margo, Vonstein, Veronika, Warren, Andrew S, Wattam, Alice R, Xia, Fangfang, Yoo, Hyunseung
Published in Briefings in bioinformatics (19.07.2019)
Published in Briefings in bioinformatics (19.07.2019)
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Journal Article
The Subsystems Approach to Genome Annotation and its Use in the Project to Annotate 1000 Genomes
Overbeek, Ross, Begley, Tadhg, Butler, Ralph M., Choudhuri, Jomuna V., Chuang, Han-Yu, Cohoon, Matthew, de Crécy-Lagard, Valérie, Diaz, Naryttza, Disz, Terry, Edwards, Robert, Fonstein, Michael, Frank, Ed D., Gerdes, Svetlana, Glass, Elizabeth M., Goesmann, Alexander, Hanson, Andrew, Iwata-Reuyl, Dirk, Jensen, Roy, Jamshidi, Neema, Krause, Lutz, Kubal, Michael, Larsen, Niels, Linke, Burkhard, McHardy, Alice C., Meyer, Folker, Neuweger, Heiko, Olsen, Gary, Olson, Robert, Osterman, Andrei, Portnoy, Vasiliy, Pusch, Gordon D., Rodionov, Dmitry A., Rückert, Christian, Steiner, Jason, Stevens, Rick, Thiele, Ines, Vassieva, Olga, Ye, Yuzhen, Zagnitko, Olga, Vonstein, Veronika
Published in Nucleic acids research (01.01.2005)
Published in Nucleic acids research (01.01.2005)
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Journal Article
Real Time Metagenomics: Using k-mers to annotate metagenomes
EDWARDS, Robert A, OLSON, Robert, DISZ, Terry, PUSCH, Gordon D, VONSTEIN, Veronika, STEVENS, Rick, OVERBEEK, Ross
Published in Bioinformatics (01.12.2012)
Published in Bioinformatics (01.12.2012)
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Journal Article
The National Microbial Pathogen Database Resource (NMPDR): a genomics platform based on subsystem annotation
Leslie Klis McNeil, Reich, Claudia, Aziz, Ramy K, Bartels, Daniela, Cohoon, Matthew, Disz, Terry, Edwards, Robert A, Gerdes, Svetlana, Hwang, Kaitlyn, Kubal, Michael, Margaryan, Gohar Rem, Meyer, Folker, Mihalo, William, Olsen, Gary J, Olson, Robert
Published in Nucleic acids research (01.01.2007)
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Published in Nucleic acids research (01.01.2007)
Journal Article
RASTtk: A modular and extensible implementation of the RAST algorithm for building custom annotation pipelines and annotating batches of genomes
Brettin, Thomas, Davis, James J., Disz, Terry, Edwards, Robert A., Gerdes, Svetlana, Olsen, Gary J., Olson, Robert, Overbeek, Ross, Parrello, Bruce, Pusch, Gordon D., Shukla, Maulik, Thomason, James A., Stevens, Rick, Vonstein, Veronika, Wattam, Alice R., Xia, Fangfang
Published in Scientific reports (10.02.2015)
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Published in Scientific reports (10.02.2015)
Journal Article
The SEED and the Rapid Annotation of microbial genomes using Subsystems Technology (RAST)
Overbeek, Ross, Olson, Robert, Pusch, Gordon D., Olsen, Gary J., Davis, James J., Disz, Terry, Edwards, Robert A., Gerdes, Svetlana, Parrello, Bruce, Shukla, Maulik, Vonstein, Veronika, Wattam, Alice R., Xia, Fangfang, Stevens, Rick
Published in Nucleic acids research (29.11.2013)
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Published in Nucleic acids research (29.11.2013)
Journal Article
National Microbial Pathogen Database Resource (NMPDR): a genomics platform based on subsystem annotation
McNeil, Leslie Klis, Reich, Claudia, Aziz, Ramy K, Bartels, Daniela, Cohoon, Matthew, Disz, Terry, Edwards, Robert A, Gerdes, Svetlana, Hwang, Kaitlyn, Kubal, Michael, Margaryan, Gohar Rem, Meyer, Folker, Mihalo, William, Olsen, Gary J, Olson, Robert, Osterman, Andrei, Paarmann, Daniel, Paczian, Tobias, Parrello, Bruce, Pusch, Gordon D, Rodionov, Dmitry A, Shi, Xinghua, Vassieva, Olga, Vonstein, Veronika, Zagnitko, Olga, Xia, Fangfang, Zinner, Jenifer, Overbeek, Ross, Stevens, Rick
Published in Nucleic acids research (01.01.2007)
Published in Nucleic acids research (01.01.2007)
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Journal Article
Connecting genotype to phenotype in the era of high-throughput sequencing
Henry, Christopher S., Overbeek, Ross, Xia, Fangfang, Best, Aaron A., Glass, Elizabeth, Gilbert, Jack, Larsen, Peter, Edwards, Rob, Disz, Terry, Meyer, Folker, Vonstein, Veronika, DeJongh, Matthew, Bartels, Daniela, Desai, Narayan, D'Souza, Mark, Devoid, Scott, Keegan, Kevin P., Olson, Robert, Wilke, Andreas, Wilkening, Jared, Stevens, Rick L.
Published in Biochimica et biophysica acta (01.10.2011)
Published in Biochimica et biophysica acta (01.10.2011)
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Journal Article
PATRIC, the bacterial bioinformatics database and analysis resource
Wattam, Alice R., Abraham, David, Dalay, Oral, Disz, Terry L., Driscoll, Timothy, Gabbard, Joseph L., Gillespie, Joseph J., Gough, Roger, Hix, Deborah, Kenyon, Ronald, Machi, Dustin, Mao, Chunhong, Nordberg, Eric K., Olson, Robert, Overbeek, Ross, Pusch, Gordon D., Shukla, Maulik, Schulman, Julie, Stevens, Rick L., Sullivan, Daniel E., Vonstein, Veronika, Warren, Andrew, Will, Rebecca, Wilson, Meredith J. C., Yoo, Hyun Seung, Zhang, Chengdong, Zhang, Yan, Sobral, Bruno W.
Published in Nucleic acids research (12.11.2013)
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Published in Nucleic acids research (12.11.2013)
Journal Article
An Infrastructure of Network Services for Seamless Integration in Advanced Collaborative Computing Environments
Han Gao, Judson, I.R., Uram, T., Lefvert, S., Disz, T.L., Papka, M.E., Stevens, R.L.
Published in 2005 IEEE International Conference on Cluster Computing (01.09.2005)
Published in 2005 IEEE International Conference on Cluster Computing (01.09.2005)
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Conference Proceeding
Capability matching of data streams with network services
Han Gao, Judson, I.R., Uram, T., Disz, T.L., Papka, M.E., Stevens, R.L.
Published in IEEE International Symposium on Cluster Computing and the Grid, 2004. CCGrid 2004 (2004)
Published in IEEE International Symposium on Cluster Computing and the Grid, 2004. CCGrid 2004 (2004)
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Conference Proceeding
The National HPCC Software Exchange
Browne, S., Dongarra, J., Green, S., Moore, K., Rowan, T., Wade, R., Fox, G., Hawick, K., Kennedy, K., Pool, J., Stevens, R., Ogson, B., Disz, T.
Published in IEEE computational science & engineering (1995)
Published in IEEE computational science & engineering (1995)
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Journal Article