Comparative Metagenomics of Microbial Communities
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Published in Science (American Association for the Advancement of Science) (22.04.2005)
Published in Science (American Association for the Advancement of Science) (22.04.2005)
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complete genome sequence of Moorella thermoacetica (f. Clostridium thermoaceticum)
Pierce, Elizabeth, Xie, Gary, Barabote, Ravi D, Saunders, Elizabeth, Han, Cliff S, Detter, John C, Richardson, Paul, Brettin, Thomas S, Das, Amaresh, Ljungdahl, Lars G, Ragsdale, Stephen W
Published in Environmental microbiology (01.10.2008)
Published in Environmental microbiology (01.10.2008)
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Analysis of the neurotoxin complex genes in Clostridium botulinum A1-A4 and B1 strains: BoNT/A3, /Ba4 and /B1 clusters are located within plasmids
Smith, Theresa J, Hill, Karen K, Foley, Brian T, Detter, John C, Munk, A Christine, Bruce, David C, Doggett, Norman A, Smith, Leonard A, Marks, James D, Xie, Gary, Brettin, Thomas S
Published in PloS one (05.12.2007)
Published in PloS one (05.12.2007)
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Recombination and insertion events involving the botulinum neurotoxin complex genes in Clostridium botulinum types A, B, E and F and Clostridium butyricum type E strains
Hill, Karen K, Xie, Gary, Foley, Brian T, Smith, Theresa J, Munk, Amy C, Bruce, David, Smith, Leonard A, Brettin, Thomas S, Detter, John C
Published in BMC biology (05.10.2009)
Published in BMC biology (05.10.2009)
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Genome Sequence of the Dioxin-Mineralizing Bacterium Sphingomonas wittichii RW1
MILLER, Todd R, DELCHER, Arthur L, SALZBERG, Steven L, SAUNDERS, Elizabeth, DETTER, John C, HALDEN, Rolf U
Published in Journal of Bacteriology (01.11.2010)
Published in Journal of Bacteriology (01.11.2010)
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Comparison of the Complete Genome Sequences of Pseudomonas syringae pv. syringae B728a and pv. tomato DC3000
Feil, Helene, Feil, William S., Chain, Patrick, Larimer, Frank, DiBartolo, Genevieve, Copeland, Alex, Lykidis, Athanasios, Trong, Stephen, Nolan, Matt, Goltsman, Eugene, Thiel, James, Malfatti, Stephanie, Loper, Joyce E., Lapidus, Alla, Detter, John C., Land, Miriam, Richardson, Paul M., Kyrpides, Nikos C., Ivanova, Natalia, Lindow, Steven E.
Published in Proceedings of the National Academy of Sciences - PNAS (02.08.2005)
Published in Proceedings of the National Academy of Sciences - PNAS (02.08.2005)
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genome of the Gram-positive metal- and sulfate-reducing bacterium Desulfotomaculum reducens strain MI-1
Junier, Pilar, Junier, Thomas, Podell, Sheila, Sims, David R, Detter, John C, Lykidis, Athanasios, Han, Cliff S, Wigginton, Nicholas S, Gaasterland, Terry, Bernier-Latmani, Rizlan
Published in Environmental microbiology (01.10.2010)
Published in Environmental microbiology (01.10.2010)
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Genome Sequence of the Cellulolytic Gliding Bacterium Cytophaga hutchinsonii
Xie, Gary, Bruce, David C, Challacombe, Jean F, Chertkov, Olga, Detter, John C, Gilna, Paul, Han, Cliff S, Lucas, Susan, Misra, Monica, Myers, Gerald L, Richardson, Paul, Tapia, Roxanne, Thayer, Nina, Thompson, Linda S, Brettin, Thomas S, Henrissat, Bernard, Wilson, David B, McBride, Mark J
Published in Applied and Environmental Microbiology (01.06.2007)
Published in Applied and Environmental Microbiology (01.06.2007)
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Complete Genome of the Cellulolytic Ruminal Bacterium Ruminococcus albus 7
SUEN, Garret, STEVENSON, David M, HAUSER, Loren J, IVANOVA, Natalia N, KYRPIDES, Nikos C, LAND, Miriam L, LAPIDUS, Alla, LUCAS, Susan, OVCHINNIKOVA, Galina, PITLUCK, Sam, TAPIA, Roxanne, WOYKE, Tanja, BRUCE, David C, BOYUM, Julie, MEAD, David, WEIMER, Paul J, CHERTKOV, Olga, COPELAND, Alex, CHENG, Jan-Feng, DETTER, Chris, DETTER, John C, GOODWIN, Lynne A, HAN, Cliff S
Published in Journal of Bacteriology (01.10.2011)
Published in Journal of Bacteriology (01.10.2011)
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Genome dynamics in a natural archaeal population
Allen, Eric E, Tyson, Gene W, Whitaker, Rachel J, Detter, John C, Richardson, Paul M, Banfield, Jillian F
Published in Proceedings of the National Academy of Sciences - PNAS (06.02.2007)
Published in Proceedings of the National Academy of Sciences - PNAS (06.02.2007)
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Nearly finished genomes produced using gel microdroplet culturing reveal substantial intraspecies genomic diversity within the human microbiome
Fitzsimons, Michael S, Novotny, Mark, Lo, Chien-Chi, Dichosa, Armand E K, Yee-Greenbaum, Joyclyn L, Snook, Jeremy P, Gu, Wei, Chertkov, Olga, Davenport, Karen W, McMurry, Kim, Reitenga, Krista G, Daughton, Ashlynn R, He, Jian, Johnson, Shannon L, Gleasner, Cheryl D, Wills, Patti L, Parson-Quintana, Beverly, Chain, Patrick S, Detter, John C, Lasken, Roger S, Han, Cliff S
Published in Genome research (01.05.2013)
Published in Genome research (01.05.2013)
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Arrangement of the Clostridium baratii F7 toxin gene cluster with identification of a σ factor that recognizes the botulinum toxin gene cluster promoters
Dover, Nir, Barash, Jason R, Burke, Julianne N, Hill, Karen K, Detter, John C, Arnon, Stephen S
Published in PloS one (22.05.2014)
Published in PloS one (22.05.2014)
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Complete Genome Sequences for the Anaerobic, Extremely Thermophilic Plant Biomass-Degrading Bacteria Caldicellulosiruptor hydrothermalis, Caldicellulosiruptor kristjanssonii, Caldicellulosiruptor kronotskyensis, Caldicellulosiruptor owensensis, and Caldicellulosiruptor lactoaceticus
BLUMER-SCHUETTE, Sara E, OZDEMIR, Inci, WOYKE, Tanja, MIKHAILOVA, Natalia, PATI, Amrita, KYRPIDES, Nikos C, IVANOVA, Natalia, DETTER, John C, WALSTON-DAVENPORT, Karen, SHUNSHENG HAN, ADAMS, Michael W. W, KELLY, Robert M, MISTRY, Dhaval, LUCAS, Susan, LAPIDUS, Alla, CHENG, Jan-Fang, GOODWIN, Lynne A, PITLUCK, Samuel, LAND, Miriam L, HAUSER, Loren J
Published in Journal of Bacteriology (01.03.2011)
Published in Journal of Bacteriology (01.03.2011)
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Genome Sequence of the Anaerobic, Thermophilic, and Cellulolytic Bacterium “Anaerocellum thermophilum” DSM 6725
KATAEVA, Irina A, YANG, Sung-Jae, DETTER, John C, HAUSER, Loren J, WESTPHELING, Janet, ADAMS, Michael W. W, DAM, Phuongan, POOLE, Farris L, YANBIN YIN, FENGFENG ZHOU, CHOU, Wen-Chi, YING XU, GOODWIN, Lynne, SIMS, David R
Published in Journal of Bacteriology (01.06.2009)
Published in Journal of Bacteriology (01.06.2009)
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Complete Genome Sequence and Updated Annotation of Desulfovibrio alaskensis G20
HAUSER, Loren J, LAND, Miriam L, TAPIA, Roxanne, HAN, Cliff S, GOODWIN, Lynne A, CHENG, Jan-Fang, PITLUCK, Samuel, COPELAND, Alex, LUCAS, Susan, NOLAN, Matt, LAPIDUS, Alla L, PALUMBO, Anthony V, BROWN, Steven D, WALL, Judy D, LARIMER, Frank, KELLER, Kimberly L, RAPP-GILES, Barbara J, PRICE, Morgan N, LIN, Monica, BRUCE, David C, DETTER, John C
Published in Journal of Bacteriology (01.08.2011)
Published in Journal of Bacteriology (01.08.2011)
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A comparative genomics perspective on the genetic content of the alkaliphilic haloarchaeon Natrialba magadii ATCC 43099T
Siddaramappa, Shivakumara, Challacombe, Jean F, Decastro, Rosana E, Pfeiffer, Friedhelm, Sastre, Diego E, Giménez, María I, Paggi, Roberto A, Detter, John C, Davenport, Karen W, Goodwin, Lynne A, Kyrpides, Nikos, Tapia, Roxanne, Pitluck, Samuel, Lucas, Susan, Woyke, Tanja, Maupin-Furlow, Julie A
Published in BMC genomics (04.05.2012)
Published in BMC genomics (04.05.2012)
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Exception to the Rule: Genomic Characterization of Naturally Occurring Unusual Vibrio cholerae Strains with a Single Chromosome
Sozhamannan, Shanmuga, Detter, John C., Waldminghaus, Torsten, Rajavel, Mathumathi, Davenport, Karen, Johnson, Shannon L., Xie, Gary, Chain, Patrick
Published in International journal of genomics (01.01.2017)
Published in International journal of genomics (01.01.2017)
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Complete Genome Sequence of the Thermophilic, Piezophilic, Heterotrophic Bacterium Marinitoga piezophila KA3
Lucas, Susan, Han, James, Lapidus, Alla, Cheng, Jan-Fang, Goodwin, Lynne A, Pitluck, Sam, Peters, Lin, Mikhailova, Natalia, Teshima, Hazuki, Detter, John C, Han, Cliff, Tapia, Roxanne, Land, Miriam, Hauser, Loren, Kyrpides, Nikos C, Ivanova, Natalia, Pagani, Ioanna, Vannier, Pauline, Oger, Phil, Bartlett, Douglas H, Noll, Kenneth M, Woyke, Tanja, Jebbar, Mohamed
Published in Journal of Bacteriology (01.11.2012)
Published in Journal of Bacteriology (01.11.2012)
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Genome Sequence of the Mercury-Methylating Strain Desulfovibrio desulfuricans ND132
BROWN, Steven D, GILMOUR, Cynthia C, DETTER, John C, TAPIA, Roxanne, HAY, Cliff S, GOODWIN, Lynne A, CHENG, Jan-Fang, PITLUCK, Samuel, WOYKE, Tanja, MIKHAILOVA, Natalia, IVANOVA, Natalia N, HAN, James, KUCKEN, Amy M, LUCAS, Susan, LAPIDUS, Alla L, LAND, Miriam L, HAUSER, Loren J, PALUMBO, Anthony V, WALL, Judy D, ELIAS, Dwayne A, BRANDT, Craig C, PODAR, Mircea, CHERTKOV, Olga, HELD, Brittany, BRUCE, David C
Published in Journal of Bacteriology (01.04.2011)
Published in Journal of Bacteriology (01.04.2011)
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Complete genome sequence of the Antarctic Halorubrum lacusprofundi type strain ACAM 34
Anderson, Iain J, DasSarma, Priya, Lucas, Susan, Copeland, Alex, Lapidus, Alla, Del Rio, Tijana Glavina, Tice, Hope, Dalin, Eileen, Bruce, David C, Goodwin, Lynne, Pitluck, Sam, Sims, David, Brettin, Thomas S, Detter, John C, Han, Cliff S, Larimer, Frank, Hauser, Loren, Land, Miriam, Ivanova, Natalia, Richardson, Paul, Cavicchioli, Ricardo, DasSarma, Shiladitya, Woese, Carl R, Kyrpides, Nikos C
Published in Environmental microbiome (10.09.2016)
Published in Environmental microbiome (10.09.2016)
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