Performance tuning of microfluidic flow-focusing droplet generators
Lashkaripour, Ali, Rodriguez, Christopher, Ortiz, Luis, Densmore, Douglas
Published in Lab on a chip (13.03.2019)
Published in Lab on a chip (13.03.2019)
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Machine learning enables design automation of microfluidic flow-focusing droplet generation
Lashkaripour, Ali, Rodriguez, Christopher, Mehdipour, Noushin, Mardian, Rizki, McIntyre, David, Ortiz, Luis, Campbell, Joshua, Densmore, Douglas
Published in Nature communications (04.01.2021)
Published in Nature communications (04.01.2021)
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Genetic circuit design automation
Nielsen, Alec A. K., Der, Bryan S., Shin, Jonghyeon, Vaidyanathan, Prashant, Paralanov, Vanya, Strychalski, Elizabeth A., Ross, David, Densmore, Douglas, Voigt, Christopher A.
Published in Science (American Association for the Advancement of Science) (01.04.2016)
Published in Science (American Association for the Advancement of Science) (01.04.2016)
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ICOR: improving codon optimization with recurrent neural networks
Jain, Rishab, Jain, Aditya, Mauro, Elizabeth, LeShane, Kevin, Densmore, Douglas
Published in BMC bioinformatics (04.04.2023)
Published in BMC bioinformatics (04.04.2023)
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Functional optimization of gene clusters by combinatorial design and assembly
Smanski, Michael J, Bhatia, Swapnil, Zhao, Dehua, Park, YongJin, B A Woodruff, Lauren, Giannoukos, Georgia, Ciulla, Dawn, Busby, Michele, Calderon, Johnathan, Nicol, Robert, Gordon, D Benjamin, Densmore, Douglas, Voigt, Christopher A
Published in Nature biotechnology (01.12.2014)
Published in Nature biotechnology (01.12.2014)
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Interactive assembly algorithms for molecular cloning
Appleton, Evan, Tao, Jenhan, Haddock, Traci, Densmore, Douglas
Published in Nature methods (01.06.2014)
Published in Nature methods (01.06.2014)
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The Synthetic Biology Open Language (SBOL) provides a community standard for communicating designs in synthetic biology
Galdzicki, Michal, Clancy, Kevin P, Oberortner, Ernst, Pocock, Matthew, Quinn, Jacqueline Y, Rodriguez, Cesar A, Roehner, Nicholas, Wilson, Mandy L, Adam, Laura, Anderson, J Christopher, Bartley, Bryan A, Beal, Jacob, Chandran, Deepak, Chen, Joanna, Densmore, Douglas, Endy, Drew, Grünberg, Raik, Hallinan, Jennifer, Hillson, Nathan J, Johnson, Jeffrey D, Kuchinsky, Allan, Lux, Matthew, Misirli, Goksel, Peccoud, Jean, Plahar, Hector A, Sirin, Evren, Stan, Guy-Bart, Villalobos, Alan, Wipat, Anil, Gennari, John H, Myers, Chris J, Sauro, Herbert M
Published in Nature biotechnology (01.06.2014)
Published in Nature biotechnology (01.06.2014)
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Bio-design automation: software + biology + robots
Densmore, Douglas M, Bhatia, Swapnil
Published in Trends in biotechnology (Regular ed.) (01.03.2014)
Published in Trends in biotechnology (Regular ed.) (01.03.2014)
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Eugene--a domain specific language for specifying and constraining synthetic biological parts, devices, and systems
Bilitchenko, Lesia, Liu, Adam, Cheung, Sherine, Weeding, Emma, Xia, Bing, Leguia, Mariana, Anderson, J Christopher, Densmore, Douglas
Published in PloS one (29.04.2011)
Published in PloS one (29.04.2011)
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Automated Robotic Liquid Handling Assembly of Modular DNA Devices
Ortiz, Luis, Pavan, Marilene, McCarthy, Lloyd, Timmons, Joshua, Densmore, Douglas M
Published in Journal of visualized experiments (01.12.2017)
Published in Journal of visualized experiments (01.12.2017)
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Ten simple rules for managing laboratory information
Berezin, Casey-Tyler, Aguilera, Luis U, Billerbeck, Sonja, Bourne, Philip E, Densmore, Douglas, Freemont, Paul, Gorochowski, Thomas E, Hernandez, Sarah I, Hillson, Nathan J, King, Connor R, Köpke, Michael, Ma, Shuyi, Miller, Katie M, Moon, Tae Seok, Moore, Jason H, Munsky, Brian, Myers, Chris J, Nicholas, Dequina A, Peccoud, Samuel J, Zhou, Wen, Peccoud, Jean
Published in PLoS computational biology (01.12.2023)
Published in PLoS computational biology (01.12.2023)
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Safety by design: Biosafety and biosecurity in the age of synthetic genomics
Hoffmann, Stefan A., Diggans, James, Densmore, Douglas, Dai, Junbiao, Knight, Tom, Leproust, Emily, Boeke, Jef D., Wheeler, Nicole, Cai, Yizhi
Published in iScience (17.03.2023)
Published in iScience (17.03.2023)
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DeviceEditor visual biological CAD canvas
Chen, Joanna, Densmore, Douglas, Ham, Timothy S, Keasling, Jay D, Hillson, Nathan J
Published in Journal of biological engineering (28.02.2012)
Published in Journal of biological engineering (28.02.2012)
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Genetic circuit design automation for yeast
Chen, Ye, Zhang, Shuyi, Young, Eric M., Jones, Timothy S., Densmore, Douglas, Voigt, Christopher A.
Published in Nature microbiology (01.11.2020)
Published in Nature microbiology (01.11.2020)
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Algorithms for the selection of fluorescent reporters
Vaidyanathan, Prashant, Appleton, Evan, Tran, David, Vahid, Alexander, Church, George, Densmore, Douglas
Published in Communications biology (26.01.2021)
Published in Communications biology (26.01.2021)
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