A gene-based association method for mapping traits using reference transcriptome data
Gamazon, Eric R, Wheeler, Heather E, Shah, Kaanan P, Mozaffari, Sahar V, Aquino-Michaels, Keston, Carroll, Robert J, Eyler, Anne E, Denny, Joshua C, Nicolae, Dan L, Cox, Nancy J, Im, Hae Kyung
Published in Nature genetics (01.09.2015)
Published in Nature genetics (01.09.2015)
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Learning from Longitudinal Data in Electronic Health Record and Genetic Data to Improve Cardiovascular Event Prediction
Zhao, Juan, Feng, QiPing, Wu, Patrick, Lupu, Roxana A, Wilke, Russell A, Wells, Quinn S, Denny, Joshua C, Wei, Wei-Qi
Published in Scientific reports (24.01.2019)
Published in Scientific reports (24.01.2019)
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Evaluating phecodes, clinical classification software, and ICD-9-CM codes for phenome-wide association studies in the electronic health record
Wei, Wei-Qi, Bastarache, Lisa A, Carroll, Robert J, Marlo, Joy E, Osterman, Travis J, Gamazon, Eric R, Cox, Nancy J, Roden, Dan M, Denny, Joshua C
Published in PloS one (07.07.2017)
Published in PloS one (07.07.2017)
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Use of Genetic Variants Related to Antihypertensive Drugs to Inform on Efficacy and Side Effects
Gill, Dipender, Georgakis, Marios K, Koskeridis, Fotios, Jiang, Lan, Feng, Qiping, Wei, Wei-Qi, Theodoratou, Evropi, Elliott, Paul, Denny, Joshua C, Malik, Rainer, Evangelou, Evangelos, Dehghan, Abbas, Dichgans, Martin, Tzoulaki, Ioanna
Published in Circulation (New York, N.Y.) (23.07.2019)
Published in Circulation (New York, N.Y.) (23.07.2019)
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Genetically determined serum urate levels and cardiovascular and other diseases in UK Biobank cohort: A phenome-wide mendelian randomization study
Li, Xue, Meng, Xiangrui, He, Yazhou, Spiliopoulou, Athina, Timofeeva, Maria, Wei, Wei-Qi, Gifford, Aliya, Yang, Tian, Varley, Tim, Tzoulaki, Ioanna, Joshi, Peter, Denny, Joshua C, Mckeigue, Paul, Campbell, Harry, Theodoratou, Evropi
Published in PLoS medicine (18.10.2019)
Published in PLoS medicine (18.10.2019)
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Diversity and inclusion for the All of Us research program: A scoping review
Mapes, Brandy M, Foster, Christopher S, Kusnoor, Sheila V, Epelbaum, Marcia I, AuYoung, Mona, Jenkins, Gwynne, Lopez-Class, Maria, Richardson-Heron, Dara, Elmi, Ahmed, Surkan, Karl, Cronin, Robert M, Wilkins, Consuelo H, Pérez-Stable, Eliseo J, Dishman, Eric, Denny, Joshua C, Rutter, Joni L
Published in PloS one (01.07.2020)
Published in PloS one (01.07.2020)
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PheWAS: demonstrating the feasibility of a phenome-wide scan to discover gene–disease associations
Denny, Joshua C., Ritchie, Marylyn D., Basford, Melissa A., Pulley, Jill M., Bastarache, Lisa, Brown-Gentry, Kristin, Wang, Deede, Masys, Dan R., Roden, Dan M., Crawford, Dana C.
Published in Bioinformatics (01.05.2010)
Published in Bioinformatics (01.05.2010)
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Combining billing codes, clinical notes, and medications from electronic health records provides superior phenotyping performance
Wei, Wei-Qi, Teixeira, Pedro L, Mo, Huan, Cronin, Robert M, Warner, Jeremy L, Denny, Joshua C
Published in Journal of the American Medical Informatics Association : JAMIA (01.04.2016)
Published in Journal of the American Medical Informatics Association : JAMIA (01.04.2016)
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A study of active learning methods for named entity recognition in clinical text
Chen, Yukun, Lasko, Thomas A., Mei, Qiaozhu, Denny, Joshua C., Xu, Hua
Published in Journal of biomedical informatics (01.12.2015)
Published in Journal of biomedical informatics (01.12.2015)
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Journal Article
PheKB: a catalog and workflow for creating electronic phenotype algorithms for transportability
Kirby, Jacqueline C, Speltz, Peter, Rasmussen, Luke V, Basford, Melissa, Gottesman, Omri, Peissig, Peggy L, Pacheco, Jennifer A, Tromp, Gerard, Pathak, Jyotishman, Carrell, David S, Ellis, Stephen B, Lingren, Todd, Thompson, Will K, Savova, Guergana, Haines, Jonathan, Roden, Dan M, Harris, Paul A, Denny, Joshua C
Published in Journal of the American Medical Informatics Association : JAMIA (01.11.2016)
Published in Journal of the American Medical Informatics Association : JAMIA (01.11.2016)
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The phenotypic legacy of admixture between modern humans and Neandertals
Simonti, Corinne N., Vernot, Benjamin, Bastarache, Lisa, Bottinger, Erwin, Carrell, David S., Chisholm, Rex L., Crosslin, David R., Hebbring, Scott J., Jarvik, Gail P., Kullo, Iftikhar J., Li, Rongling, Pathak, Jyotishman, Ritchie, Marylyn D., Roden, Dan M., Verma, Shefali S., Tromp, Gerard, Prato, Jeffrey D., Bush, William S., Akey, Joshua M., Denny, Joshua C., Capra, John A.
Published in Science (American Association for the Advancement of Science) (12.02.2016)
Published in Science (American Association for the Advancement of Science) (12.02.2016)
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Using topic modeling via non-negative matrix factorization to identify relationships between genetic variants and disease phenotypes: A case study of Lipoprotein(a) (LPA)
Zhao, Juan, Feng, QiPing, Wu, Patrick, Warner, Jeremy L, Denny, Joshua C, Wei, Wei-Qi
Published in PloS one (13.02.2019)
Published in PloS one (13.02.2019)
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A comparison of rule-based and machine learning approaches for classifying patient portal messages
Cronin, Robert M., Fabbri, Daniel, Denny, Joshua C., Rosenbloom, S. Trent, Jackson, Gretchen Purcell
Published in International journal of medical informatics (Shannon, Ireland) (01.09.2017)
Published in International journal of medical informatics (Shannon, Ireland) (01.09.2017)
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Phenome-wide Mendelian-randomization study of genetically determined vitamin D on multiple health outcomes using the UK Biobank study
Meng, Xiangrui, Li, Xue, Timofeeva, Maria N, He, Yazhou, Spiliopoulou, Athina, Wei, Wei-Qi, Gifford, Aliya, Wu, Hongjiang, Varley, Timothy, Joshi, Peter, Denny, Joshua C, Farrington, Susan M, Zgaga, Lina, Dunlop, Malcolm G, McKeigue, Paul, Campbell, Harry, Theodoratou, Evropi
Published in International journal of epidemiology (01.10.2019)
Published in International journal of epidemiology (01.10.2019)
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