Predicting Cancer Drug Response using a Recommender System
Suphavilai, Chayaporn, Bertrand, Denis, Nagarajan, Niranjan
Published in Bioinformatics (15.11.2018)
Published in Bioinformatics (15.11.2018)
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Journal Article
LoFreq: a sequence-quality aware, ultra-sensitive variant caller for uncovering cell-population heterogeneity from high-throughput sequencing datasets
Wilm, Andreas, Aw, Pauline Poh Kim, Bertrand, Denis, Yeo, Grace Hui Ting, Ong, Swee Hoe, Wong, Chang Hua, Khor, Chiea Chuen, Petric, Rosemary, Hibberd, Martin Lloyd, Nagarajan, Niranjan
Published in Nucleic acids research (01.12.2012)
Published in Nucleic acids research (01.12.2012)
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Journal Article
GEPS-Based Monthly Prediction at the Canadian Meteorological Centre
Lin, Hai, Gagnon, Normand, Beauregard, Stephane, Muncaster, Ryan, Markovic, Marko, Denis, Bertrand, Charron, Martin
Published in Monthly weather review (01.12.2016)
Published in Monthly weather review (01.12.2016)
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Journal Article
Calibration of subseasonal sea‐ice forecasts using ensemble model output statistics and observational uncertainty
Dirkson, Arlan, Denis, Bertrand, Merryfield, William J., Peterson, K. Andrew, Tietsche, Steffen
Published in Quarterly journal of the Royal Meteorological Society (01.07.2022)
Published in Quarterly journal of the Royal Meteorological Society (01.07.2022)
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Journal Article
Genome-centric analysis of short and long read metagenomes reveals uncharacterized microbiome diversity in Southeast Asians
Gounot, Jean-Sebastien, Chia, Minghao, Bertrand, Denis, Saw, Woei-Yuh, Ravikrishnan, Aarthi, Low, Adrian, Ding, Yichen, Ng, Amanda Hui Qi, Tan, Linda Wei Lin, Teo, Yik-Ying, Seedorf, Henning, Nagarajan, Niranjan
Published in Nature communications (13.10.2022)
Published in Nature communications (13.10.2022)
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Journal Article
A MinION™‐based pipeline for fast and cost‐effective DNA barcoding
Srivathsan, Amrita, Baloğlu, Bilgenur, Wang, Wendy, Tan, Wei X., Bertrand, Denis, Ng, Amanda H. Q., Boey, Esther J. H., Koh, Jayce J. Y., Nagarajan, Niranjan, Meier, Rudolf
Published in Molecular ecology resources (01.09.2018)
Published in Molecular ecology resources (01.09.2018)
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Journal Article
Cloning and variation of ground state intestinal stem cells
Wang, Xia, Yamamoto, Yusuke, Wilson, Lane H., Zhang, Ting, Howitt, Brooke E., Farrow, Melissa A., Kern, Florian, Ning, Gang, Hong, Yue, Khor, Chiea Chuen, Chevalier, Benoit, Bertrand, Denis, Wu, Lingyan, Nagarajan, Niranjan, Sylvester, Francisco A., Hyams, Jeffrey S., Devers, Thomas, Bronson, Roderick, Lacy, D. Borden, Ho, Khek Yu, Crum, Christopher P., McKeon, Frank, Xian, Wa
Published in Nature (London) (11.06.2015)
Published in Nature (London) (11.06.2015)
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Journal Article
THE NORTH AMERICAN MULTIMODEL ENSEMBLE: Phase-1 Seasonal-to-Interannual Prediction; Phase-2 toward Developing Intraseasonal Prediction
Kirtman, Ben P., Min, Dughong, Infanti, Johnna M., Kinter, James L., Paolino, Daniel A., Zhang, Qin, van den Dool, Huug, Saha, Suranjana, Mendez, Malaquias Pena, Becker, Emily, Peng, Peitao, Tripp, Patrick, Huang, Jin, DeWitt, David G., Tippett, Michael K., Barnston, Anthony G., Li, Shuhua, Rosati, Anthony, Schubert, Siegfried D., Rienecker, Michele, Suarez, Max, Li, Zhao E., Marshak, Jelena, Lim, Young-Kwon, Tribbia, Joseph, Pegion, Kathleen, Merryfield, William J., Denis, Bertrand, Wood, Eric F.
Published in Bulletin of the American Meteorological Society (01.04.2014)
Published in Bulletin of the American Meteorological Society (01.04.2014)
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Journal Article
Evaluating the accuracy of Listeria monocytogenes assemblies from quasimetagenomic samples using long and short reads
Commichaux, Seth, Javkar, Kiran, Ramachandran, Padmini, Nagarajan, Niranjan, Bertrand, Denis, Chen, Yi, Reed, Elizabeth, Gonzalez-Escalona, Narjol, Strain, Errol, Rand, Hugh, Pop, Mihai, Ottesen, Andrea
Published in BMC genomics (26.05.2021)
Published in BMC genomics (26.05.2021)
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Journal Article
Fine mapping of RNA isoform diversity using an innovative targeted long-read RNA sequencing protocol with novel dedicated bioinformatics pipeline
Aucouturier, Camille, Soirat, Nicolas, Castéra, Laurent, Bertrand, Denis, Atkinson, Alexandre, Lavolé, Thibaut, Goardon, Nicolas, Quesnelle, Céline, Levilly, Julien, Barbachou, Sosthène, Legros, Angelina, Caron, Olivier, Crivelli, Louise, Denizeau, Philippe, Berthet, Pascaline, Ricou, Agathe, Boulouard, Flavie, Vaur, Dominique, Krieger, Sophie, Leman, Raphael
Published in BMC genomics (30.09.2024)
Published in BMC genomics (30.09.2024)
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Journal Article
Duration of Carbapenemase-Producing Enterobacteriaceae Carriage in Hospital Patients
Mo, Yin, Hernandez-Koutoucheva, Anastasia, Musicha, Patrick, Bertrand, Denis, Lye, David, Ng, Oon Tek, Fenlon, Shannon N, Chen, Swaine L, Ling, Moi Lin, Tang, Wen Ying, Barkham, Timothy, Nagarajan, Niranjan, Cooper, Ben S, Marimuthu, Kalisvar
Published in Emerging infectious diseases (01.09.2020)
Published in Emerging infectious diseases (01.09.2020)
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Journal Article
Performance Assessment of the Innovative Autonomous Tool CETOSCOPE© Used in the Detection and Localization of Moving Underwater Sound Sources
Doh, Yann, Ecalle, Beverley, Delfour, Fabienne, Pankowski, Cyprien, Cozanet, Gildas, Becouarn, Guillaume, Ovize, Marion, Denis, Bertrand, Adam, Olivier
Published in Journal of marine science and engineering (01.05.2023)
Published in Journal of marine science and engineering (01.05.2023)
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Journal Article
Mutational spectrum of Barrett’s stem cells suggests paths to initiation of a precancerous lesion
Yamamoto, Yusuke, Wang, Xia, Bertrand, Denis, Kern, Florian, Zhang, Ting, Duleba, Marcin, Srivastava, Supriya, Khor, Chiea Chuen, Hu, Yuanyu, Wilson, Lane H., Blaszyk, Hagen, Rolshud, Daniil, Teh, Ming, Liu, Jianjun, Howitt, Brooke E., Vincent, Matthew, Crum, Christopher P., Nagarajan, Niranjan, Ho, Khek Yu, McKeon, Frank, Xian, Wa
Published in Nature communications (19.01.2016)
Published in Nature communications (19.01.2016)
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Journal Article
Stool metagenome analysis of patients with Klebsiella pneumoniae liver abscess and their domestic partners
Molton, James S., Lee, I. Russel, Bertrand, Denis, Ding, Ying, Kalimuddin, Shirin, Lye, David C., Nagarajan, Niranjan, Gan, Yunn-Hwen, Archuleta, Sophia
Published in International journal of infectious diseases (01.06.2021)
Published in International journal of infectious diseases (01.06.2021)
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Journal Article
Tissue Microbiome Profiling Identifies an Enrichment of Specific Enteric Bacteria in Opisthorchis viverrini Associated Cholangiocarcinoma
Chng, Kern Rei, Chan, Sock Hoai, Ng, Amanda Hui Qi, Li, Chenhao, Jusakul, Apinya, Bertrand, Denis, Wilm, Andreas, Choo, Su Pin, Tan, Damien Meng Yew, Lim, Kiat Hon, Soetinko, Roy, Ong, Choon Kiat, Duda, Dan G., Dima, Simona, Popescu, Irinel, Wongkham, Chaisiri, Feng, Zhu, Yeoh, Khay Guan, Teh, Bin Tean, Yongvanit, Puangrat, Wongkham, Sopit, Bhudhisawasdi, Vajaraphongsa, Khuntikeo, Narong, Tan, Patrick, Pairojkul, Chawalit, Ngeow, Joanne, Nagarajan, Niranjan
Published in EBioMedicine (01.06.2016)
Published in EBioMedicine (01.06.2016)
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Journal Article