Giant virus diversity and host interactions through global metagenomics
Schulz, Frederik, Roux, Simon, Paez-Espino, David, Jungbluth, Sean, Walsh, David A., Denef, Vincent J., McMahon, Katherine D., Konstantinidis, Konstantinos T., Eloe-Fadrosh, Emiley A., Kyrpides, Nikos C., Woyke, Tanja
Published in Nature (London) (20.02.2020)
Published in Nature (London) (20.02.2020)
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The genetic and ecophysiological diversity of Microcystis
Dick, Gregory J., Duhaime, Melissa B., Evans, Jacob T., Errera, Reagan M., Godwin, Casey M., Kharbush, Jenan J., Nitschky, Helena S., Powers, McKenzie A., Vanderploeg, Henry A., Schmidt, Kathryn C., Smith, Derek J., Yancey, Colleen E., Zwiers, Claire C., Denef, Vincent J.
Published in Environmental microbiology (01.12.2021)
Published in Environmental microbiology (01.12.2021)
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Verrucomicrobia are prevalent in north-temperate freshwater lakes and display class-level preferences between lake habitats
Chiang, Edna, Schmidt, Marian L, Berry, Michelle A, Biddanda, Bopaiah A, Burtner, Ashley, Johengen, Thomas H, Palladino, Danna, Denef, Vincent J
Published in PloS one (28.03.2018)
Published in PloS one (28.03.2018)
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Strain-resolved community genomic analysis of gut microbial colonization in a premature infant
Morowitz, Michael J., Denef, Vincent J., Costello, Elizabeth K., Thomas, Brian C., Poroyko, Valeriy, Relman, David A., Banfield, Jillian F., Gordon, Jeffrey I.
Published in Proceedings of the National Academy of Sciences - PNAS (18.01.2011)
Published in Proceedings of the National Academy of Sciences - PNAS (18.01.2011)
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Genome sequences of lower Great Lakes Microcystis sp. reveal strain-specific genes that are present and expressed in western Lake Erie blooms
Meyer, Kevin Anthony, Davis, Timothy W, Watson, Susan B, Denef, Vincent J, Berry, Michelle A, Dick, Gregory J
Published in PloS one (11.10.2017)
Published in PloS one (11.10.2017)
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Microbiomes Reduce Their Host's Sensitivity to Interspecific Interactions
Jackrel, Sara L, Schmidt, Kathryn C, Cardinale, Bradley J, Denef, Vincent J
Published in mBio (21.01.2020)
Published in mBio (21.01.2020)
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Are Oligotypes Meaningful Ecological and Phylogenetic Units? A Case Study of Microcystis in Freshwater Lakes
Berry, Michelle A, White, Jeffrey D, Davis, Timothy W, Jain, Sunit, Johengen, Thomas H, Dick, Gregory J, Sarnelle, Orlando, Denef, Vincent J
Published in Frontiers in microbiology (08.03.2017)
Published in Frontiers in microbiology (08.03.2017)
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Persisting viral sequences shape microbial CRISPR-based immunity
Weinberger, Ariel D, Sun, Christine L, Pluciński, Mateusz M, Denef, Vincent J, Thomas, Brian C, Horvath, Philippe, Barrangou, Rodolphe, Gilmore, Michael S, Getz, Wayne M, Banfield, Jillian F
Published in PLoS computational biology (01.04.2012)
Published in PLoS computational biology (01.04.2012)
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Correction: Verrucomicrobia are prevalent in north-temperate freshwater lakes and display class-level preferences between lake habitats
Chiang, Edna, Schmidt, Marian L, Berry, Michelle A, Biddanda, Bopaiah A, Burtner, Ashley, Johengen, Thomas H, Palladino, Danna, Denef, Vincent J
Published in PloS one (22.10.2018)
Published in PloS one (22.10.2018)
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Proteogenomic basis for ecological divergence of closely related bacteria in natural acidophilic microbial communities
Denef, Vincent J, Kalnejais, Linda H, Mueller, Ryan S, Wilmes, Paul, Baker, Brett J, Thomas, Brian C, VerBerkmoes, Nathan C, Hettich, Robert L, Banfield, Jillian F
Published in Proceedings of the National Academy of Sciences - PNAS (09.02.2010)
Published in Proceedings of the National Academy of Sciences - PNAS (09.02.2010)
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Burkholderia xenovorans LB400 Harbors a Multi-Replicon, 9.73-Mbp Genome Shaped for Versatility
Chain, Patrick S. G., Denef, Vincent J., Konstantinidis, Konstantinos T., Vergez, Lisa M., Agulló, Loreine, Reyes, Valeria Latorre, Hauser, Loren, Córdova, Macarena, Gómez, Luis, González, Myriam, Land, Miriam, Lao, Victoria, Larimer, Frank, LiPuma, John J., Mahenthiralingam, Eshwar, Malfatti, Stephanie A., Marx, Christopher J., Parnell, J. Jacob, Ramette, Alban, Richardson, Paul, Seeger, Michael, Smith, Daryl, Spilker, Theodore, Sul, Woo Jun, Tsoi, Tamara V., Ulrich, Luke E., Zhulin, Igor B., Tiedje, James M.
Published in Proceedings of the National Academy of Sciences - PNAS (17.10.2006)
Published in Proceedings of the National Academy of Sciences - PNAS (17.10.2006)
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dynamic genetic repertoire of microbial communities
Wilmes, Paul, Simmons, Sheri L, Denef, Vincent J, Banfield, Jillian F
Published in FEMS microbiology reviews (01.01.2009)
Published in FEMS microbiology reviews (01.01.2009)
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Community Genomic and Proteomic Analyses of Chemoautotrophic Iron-Oxidizing “Leptospirillum rubarum” (Group II) and “Leptospirillum ferrodiazotrophum” (Group III) Bacteria in Acid Mine Drainage Biofilms
ALIAGA GOLTSMAN, Daniela S, DENEF, Vincent J, BAKER, Brett J, HAUSER, Loren, LAND, Miriam, SHAH, Manesh B, THELEN, Michael P, HETTICH, Robert L, BANFIELD, Jillian F, SINGER, Steven W, VERBERKMOES, Nathan C, LEFSRUD, Mark, MUELLER, Ryan S, DICK, Gregory J, SUN, Christine L, WHEELER, Korin E, ZEMLA, Adam
Published in Applied and Environmental Microbiology (01.07.2009)
Published in Applied and Environmental Microbiology (01.07.2009)
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Gene Expansion and Positive Selection as Bacterial Adaptations to Oligotrophic Conditions
Props, Ruben, Monsieurs, Pieter, Vandamme, Peter, Leys, Natalie, Denef, Vincent J, Boon, Nico
Published in mSphere (06.02.2019)
Published in mSphere (06.02.2019)
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