CorNet: Assigning function to networks of co-evolving residues by automated literature mining
van den Bergh, Tom, Tamo, Giorgio, Nobili, Alberto, Tao, Yifeng, Tan, Tianwei, Bornscheuer, Uwe T, Kuipers, Remko K P, Vroling, Bas, de Jong, René M, Subramanian, Kalyanasundaram, Schaap, Peter J, Desmet, Tom, Nidetzky, Bernd, Vriend, Gert, Joosten, Henk-Jan
Published in PloS one (18.05.2017)
Published in PloS one (18.05.2017)
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Journal Article
Coupling Protein Side-Chain and Backbone Flexibility Improves the Re-design of Protein-Ligand Specificity
Ollikainen, Noah, de Jong, René M, Kortemme, Tanja
Published in PLoS computational biology (01.09.2015)
Published in PLoS computational biology (01.09.2015)
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Journal Article
Computation-Aided Engineering of Cytochrome P450 for the Production of Pravastatin
Ashworth, Mark A., Bombino, Elvira, de Jong, René M., Wijma, Hein J., Janssen, Dick B., McLean, Kirsty J., Munro, Andrew W.
Published in ACS catalysis (16.12.2022)
Published in ACS catalysis (16.12.2022)
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Journal Article
Metal Dependence of the Xylose Isomerase from Piromyces sp. E2 Explored by Activity Profiling and Protein Crystallography
Lee, Misun, Rozeboom, Henriëtte J, de Waal, Paul P, de Jong, Rene M, Dudek, Hanna M, Janssen, Dick B
Published in Biochemistry (Easton) (14.11.2017)
Published in Biochemistry (Easton) (14.11.2017)
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Journal Article
Valencene synthase from the heartwood of Nootka cypress (Callitropsis nootkatensis) for biotechnological production of valencene
Beekwilder, Jules, Houwelingen, Adèle, Cankar, Katarina, Dijk, Aalt D.J, Jong, René M, Stoopen, Geert, Bouwmeester, Harro, Achkar, Jihane, Sonke, Theo, Bosch, Dirk
Published in Plant biotechnology journal (01.02.2014)
Published in Plant biotechnology journal (01.02.2014)
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Journal Article
Structural and time‐resolved mechanistic investigations of protein hydrolysis by the acidic proline‐specific endoprotease from Aspergillus niger
Pijning, Tjaard, Vujičić‐Žagar, Andreja, Laan, Jan‐Metske, Jong, René M., Ramirez‐Palacios, Carlos, Vente, Andre, Edens, Luppo, Dijkstra, Bauke W.
Published in Protein science (01.01.2024)
Published in Protein science (01.01.2024)
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Journal Article
Valencene oxidase CYP706M1 from Alaska cedar (Callitropsis nootkatensis)
Cankar, Katarina, van Houwelingen, Adèle, Goedbloed, Miriam, Renirie, Rokus, de Jong, René M., Bouwmeester, Harro, Bosch, Dirk, Sonke, Theo, Beekwilder, Jules
Published in FEBS letters (18.03.2014)
Published in FEBS letters (18.03.2014)
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Journal Article
Introducing an Artificial Deazaflavin Cofactor in Escherichia coli and Saccharomyces cerevisiae
Lee, Misun, Drenth, Jeroen, Trajkovic, Milos, de Jong, René M, Fraaije, Marco W
Published in ACS synthetic biology (18.02.2022)
Published in ACS synthetic biology (18.02.2022)
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Journal Article
Semi-rational engineering of cytochrome CYP153A from Marinobacter aquaeolei for improved ω-hydroxylation activity towards oleic acid
Duan, Yan, Ba, Lina, Gao, Jianwei, Gao, Xianxing, Zhu, Dunming, de Jong, René M., Mink, Daniel, Kaluzna, Iwona, Lin, Zhanglin
Published in Applied microbiology and biotechnology (01.10.2016)
Published in Applied microbiology and biotechnology (01.10.2016)
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Journal Article
Semi-rational engineering of cytochrome CYP153A from Marinobacter aquaeolei for improved [omega]-hydroxylation activity towards oleic acid
Duan, Yan, Ba, Lina, Gao, Jianwei, Gao, Xianxing, Zhu, Dunming, de Jong, Rene M, Mink, Daniel, Kaluzna, Iwona, Lin, Zhanglin
Published in Applied microbiology and biotechnology (01.10.2016)
Published in Applied microbiology and biotechnology (01.10.2016)
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Journal Article
The X-Ray Structure of the Haloalcohol Dehalogenase HheA from Arthrobacter sp. Strain AD2: Insight into Enantioselectivity and Halide Binding in the Haloalcohol Dehalogenase Family
DE JONG, René M, KALK, Kor H, LIXIA TANG, JANSSEN, Dick B, DIJKSTRA, Bauke W
Published in Journal of Bacteriology (01.06.2006)
Published in Journal of Bacteriology (01.06.2006)
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Journal Article
Engineering of an endogenous hexose transporter into a specific D-xylose transporter facilitates glucose-xylose co-consumption in Saccharomyces cerevisiae
Nijland, Jeroen G, Shin, Hyun Yong, de Jong, René M, de Waal, Paul P, Klaassen, Paul, Driessen, Arnold JM
Published in Biotechnology for biofuels (2014)
Published in Biotechnology for biofuels (2014)
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Journal Article
An engineered cryptic Hxt11 sugar transporter facilitates glucose-xylose co-consumption in Saccharomyces cerevisiae
Shin, Hyun Yong, Nijland, Jeroen G, de Waal, Paul P, de Jong, René M, Klaassen, Paul, Driessen, Arnold J M
Published in Biotechnology for biofuels (02.11.2015)
Published in Biotechnology for biofuels (02.11.2015)
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Journal Article
Crystal Structures of Native and Inactivated cis-3-Chloroacrylic Acid Dehalogenase: STRUCTURAL BASIS FOR SUBSTRATE SPECIFICITY AND INACTIVATION BY (R)-OXIRANE-2-CARBOXYLATE
de Jong, René M, Bazzacco, Paola, Poelarends, Gerrit J, Johnson, William H. Jr, Kim, Yoon Jae, Burks, Elizabeth A, Serrano, Hector, Thunnissen, Andy-Mark W.H, Whitman, Christian P, Dijkstra, Bauke W
Published in The Journal of biological chemistry (26.01.2007)
Published in The Journal of biological chemistry (26.01.2007)
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Journal Article
Structural Basis for the Enantioselectivity of an Epoxide Ring Opening Reaction Catalyzed by Halo Alcohol Dehalogenase HheC
de Jong, René M, Tiesinga, Jan J. W, Villa, Alessandra, Tang, Lixia, Janssen, Dick B, Dijkstra, Bauke W
Published in Journal of the American Chemical Society (28.09.2005)
Published in Journal of the American Chemical Society (28.09.2005)
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Journal Article
Rhodoxanthin synthase from honeysuckle; a membrane diiron enzyme catalyzes the multistep conversion of β-carotene to rhodoxanthin
Royer, John, Shanklin, John, Balch-Kenney, Nathalie, Mayorga, Maria, Houston, Peter, de Jong, René M., McMahon, Jenna, Laprade, Lisa, Blomquist, Paul, Berry, Timothy, Cai, Yuanheng, LoBuglio, Katherine, Trueheart, Joshua, Chevreux, Bastien
Published in Science advances (01.04.2020)
Published in Science advances (01.04.2020)
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Journal Article