Marine microbial community dynamics and their ecological interpretation
Fuhrman, Jed A., Cram, Jacob A., Needham, David M.
Published in Nature reviews. Microbiology (01.03.2015)
Published in Nature reviews. Microbiology (01.03.2015)
Get full text
Journal Article
Short-term dynamics and interactions of marine protist communities during the spring–summer transition
Berdjeb, Lyria, Parada, Alma, Needham, David M., Fuhrman, Jed A.
Published in The ISME Journal (01.08.2018)
Published in The ISME Journal (01.08.2018)
Get full text
Journal Article
Metabolic and biogeochemical consequences of viral infection in aquatic ecosystems
Zimmerman, Amy E., Howard-Varona, Cristina, Needham, David M., John, Seth G., Worden, Alexandra Z., Sullivan, Matthew B., Waldbauer, Jacob R., Coleman, Maureen L.
Published in Nature reviews. Microbiology (01.01.2020)
Published in Nature reviews. Microbiology (01.01.2020)
Get full text
Journal Article
High-throughput, single-microbe genomics with strain resolution, applied to a human gut microbiome
Zheng, Wenshan, Zhao, Shijie, Yin, Yehang, Zhang, Huidan, Needham, David M, Evans, Ethan D, Dai, Chengzhen L, Lu, Peter J, Alm, Eric J, Weitz, David A
Published in Science (American Association for the Advancement of Science) (03.06.2022)
Published in Science (American Association for the Advancement of Science) (03.06.2022)
Get full text
Journal Article
A distinct lineage of giant viruses brings a rhodopsin photosystem to unicellular marine predators
Needham, David M., Yoshizawa, Susumu, Hosaka, Toshiaki, Poirier, Camille, Choi, Chang Jae, Hehenberger, Elisabeth, Irwin, Nicholas A. T., Wilken, Susanne, Yung, Cheuk-Man, Charles Bachy, Rika Kurihara, Nakajima, Yu, Kojima, Keiichi, Kimura-Someya, Tomomi, Leonard, Guy, Malmstrom, Rex R., Mende, Daniel R., Olson, Daniel K., Sudo, Yuki, Sudek, Sebastian, Richards, Thomas A., DeLong, Edward F., Keeling, Patrick J., Santoro, Alyson E., Shirouzu, Mikako, Iwasaki, Wataru, Worden, Alexandra Z.
Published in Proceedings of the National Academy of Sciences - PNAS (08.10.2019)
Published in Proceedings of the National Academy of Sciences - PNAS (08.10.2019)
Get full text
Journal Article
Seasonal and interannual variability of the marine bacterioplankton community throughout the water column over ten years
Cram, Jacob A, Chow, Cheryl-Emiliane T, Sachdeva, Rohan, Needham, David M, Parada, Alma E, Steele, Joshua A, Fuhrman, Jed A
Published in The ISME Journal (01.03.2015)
Published in The ISME Journal (01.03.2015)
Get full text
Journal Article
Dynamic marine viral infections and major contribution to photosynthetic processes shown by spatiotemporal picoplankton metatranscriptomes
Sieradzki, Ella T., Ignacio-Espinoza, J. Cesar, Needham, David M., Fichot, Erin B., Fuhrman, Jed A.
Published in Nature communications (12.03.2019)
Published in Nature communications (12.03.2019)
Get full text
Journal Article
Functional Bionetworks from Nanoliter Water Droplets
Holden, Matthew A, Needham, David, Bayley, Hagan
Published in Journal of the American Chemical Society (11.07.2007)
Published in Journal of the American Chemical Society (11.07.2007)
Get full text
Journal Article
Comprehensive single‐PCR 16S and 18S rRNA community analysis validated with mock communities, and estimation of sequencing bias against 18S
Yeh, Yi‐Chun, McNichol, Jesse, Needham, David M., Fichot, Erin B., Berdjeb, Lyria, Fuhrman, Jed A.
Published in Environmental microbiology (01.06.2021)
Published in Environmental microbiology (01.06.2021)
Get full text
Journal Article
Cross-depth analysis of marine bacterial networks suggests downward propagation of temporal changes
Cram, Jacob A, Xia, Li C, Needham, David M, Sachdeva, Rohan, Sun, Fengzhu, Fuhrman, Jed A
Published in The ISME Journal (01.12.2015)
Published in The ISME Journal (01.12.2015)
Get full text
Journal Article
Gradients of bacteria in the oceanic water column reveal finely-resolved vertical distributions
Harbeitner, Rachel C, Wittmers, Fabian, Yung, Charmaine C M, Eckmann, Charlotte A, Hehenberger, Elisabeth, Blum, Marguerite, Needham, David M, Worden, Alexandra Z
Published in PloS one (02.04.2024)
Published in PloS one (02.04.2024)
Get full text
Journal Article
Seasonal and Geographical Transitions in Eukaryotic Phytoplankton Community Structure in the Atlantic and Pacific Oceans
Choi, Chang Jae, Jimenez, Valeria, Needham, David M., Poirier, Camille, Bachy, Charles, Alexander, Harriet, Wilken, Susanne, Chavez, Francisco P., Sudek, Sebastian, Giovannoni, Stephen J., Worden, Alexandra Z.
Published in Frontiers in microbiology (30.09.2020)
Published in Frontiers in microbiology (30.09.2020)
Get full text
Journal Article
Viruses infecting a warm water picoeukaryote shed light on spatial co-occurrence dynamics of marine viruses and their hosts
Bachy, Charles, Yung, Charmaine C. M., Needham, David M., Gazitúa, Maria Consuelo, Roux, Simon, Limardo, Alexander J., Choi, Chang Jae, Jorgens, Danielle M., Sullivan, Matthew B., Worden, Alexandra Z.
Published in The ISME Journal (01.11.2021)
Published in The ISME Journal (01.11.2021)
Get full text
Journal Article
Genome and epigenome of a novel marine Thaumarchaeota strain suggest viral infection, phosphorothioation DNA modification and multiple restriction systems
Ahlgren, Nathan A., Chen, Yangyang, Needham, David M., Parada, Alma E., Sachdeva, Rohan, Trinh, Vickie, Chen, Ting, Fuhrman, Jed A.
Published in Environmental microbiology (01.06.2017)
Published in Environmental microbiology (01.06.2017)
Get full text
Journal Article
Temporal variability and coherence of euphotic zone bacterial communities over a decade in the Southern California Bight
Chow, Cheryl-Emiliane T, Sachdeva, Rohan, Cram, Jacob A, Steele, Joshua A, Needham, David M, Patel, Anand, Parada, Alma E, Fuhrman, Jed A
Published in The ISME Journal (01.12.2013)
Published in The ISME Journal (01.12.2013)
Get full text
Journal Article