Mammalian Heat Shock Response and Mechanisms Underlying Its Genome-wide Transcriptional Regulation
Mahat, Dig B., Salamanca, H. Hans, Duarte, Fabiana M., Danko, Charles G., Lis, John T.
Published in Molecular cell (07.04.2016)
Published in Molecular cell (07.04.2016)
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A Rapid, Extensive, and Transient Transcriptional Response to Estrogen Signaling in Breast Cancer Cells
Hah, Nasun, Danko, Charles G., Core, Leighton, Waterfall, Joshua J., Siepel, Adam, Lis, John T., Kraus, W. Lee
Published in Cell (13.05.2011)
Published in Cell (13.05.2011)
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Identification of regulatory elements from nascent transcription using dREG
Wang, Zhong, Chu, Tinyi, Choate, Lauren A, Danko, Charles G
Published in Genome research (01.02.2019)
Published in Genome research (01.02.2019)
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Base-pair-resolution genome-wide mapping of active RNA polymerases using precision nuclear run-on (PRO-seq)
Mahat, Dig Bijay, Kwak, Hojoong, Booth, Gregory T, Jonkers, Iris H, Danko, Charles G, Patel, Ravi K, Waters, Colin T, Munson, Katie, Core, Leighton J, Lis, John T
Published in Nature protocols (01.08.2016)
Published in Nature protocols (01.08.2016)
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Enhancer transcripts mark active estrogen receptor binding sites
Hah, Nasun, Murakami, Shino, Nagari, Anusha, Danko, Charles G, Kraus, W Lee
Published in Genome research (01.08.2013)
Published in Genome research (01.08.2013)
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Prediction of histone post-translational modification patterns based on nascent transcription data
Wang, Zhong, Chivu, Alexandra G., Choate, Lauren A., Rice, Edward J., Miller, Donald C., Chu, Tinyi, Chou, Shao-Pei, Kingsley, Nicole B., Petersen, Jessica L., Finno, Carrie J., Bellone, Rebecca R., Antczak, Douglas F., Lis, John T., Danko, Charles G.
Published in Nature genetics (01.03.2022)
Published in Nature genetics (01.03.2022)
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Parallel evolution of ancient, pleiotropic enhancers underlies butterfly wing pattern mimicry
Lewis, James J., Geltman, Rachel C., Pollak, Patrick C., Rondem, Kathleen E., Van Belleghem, Steven M., Hubisz, Melissa J., Munn, Paul R., Zhang, Linlin, Benson, Caleb, Mazo-Vargas, Anyi, Danko, Charles G., Counterman, Brian A., Papa, Riccardo, Reed, Robert D.
Published in Proceedings of the National Academy of Sciences - PNAS (26.11.2019)
Published in Proceedings of the National Academy of Sciences - PNAS (26.11.2019)
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Chromatin run-on and sequencing maps the transcriptional regulatory landscape of glioblastoma multiforme
Chu, Tinyi, Rice, Edward J., Booth, Gregory T., Salamanca, H. Hans, Wang, Zhong, Core, Leighton J., Longo, Sharon L., Corona, Robert J., Chin, Lawrence S., Lis, John T., Kwak, Hojoong, Danko, Charles G.
Published in Nature genetics (01.11.2018)
Published in Nature genetics (01.11.2018)
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Identification of active transcriptional regulatory elements from GRO-seq data
Danko, Charles G, Hyland, Stephanie L, Core, Leighton J, Martins, Andre L, Waters, Colin T, Lee, Hyung Won, Cheung, Vivian G, Kraus, W Lee, Lis, John T, Siepel, Adam
Published in Nature methods (01.05.2015)
Published in Nature methods (01.05.2015)
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A-MYB and BRDT-dependent RNA Polymerase II pause release orchestrates transcriptional regulation in mammalian meiosis
Alexander, Adriana K., Rice, Edward J., Lujic, Jelena, Simon, Leah E., Tanis, Stephanie, Barshad, Gilad, Zhu, Lina, Lama, Jyoti, Cohen, Paula E., Danko, Charles G.
Published in Nature communications (29.03.2023)
Published in Nature communications (29.03.2023)
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Characterizing RNA stability genome-wide through combined analysis of PRO-seq and RNA-seq data
Blumberg, Amit, Zhao, Yixin, Huang, Yi-Fei, Dukler, Noah, Rice, Edward J, Chivu, Alexandra G, Krumholz, Katie, Danko, Charles G, Siepel, Adam
Published in BMC biology (15.02.2021)
Published in BMC biology (15.02.2021)
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Comprehensive microRNA analysis across genome-edited colorectal cancer organoid models reveals miR-24 as a candidate regulator of cell survival
Villanueva, Jonathan W, Kwong, Lawrence, Han, Teng, Martinez, Salvador Alonso, Shanahan, Michael T, Kanke, Matt, Dow, Lukas E, Danko, Charles G, Sethupathy, Praveen
Published in BMC genomics (01.12.2022)
Published in BMC genomics (01.12.2022)
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