Interactions between genetic variation and cellular environment in skeletal muscle gene expression
Taylor, D Leland, Knowles, David A, Scott, Laura J, Ramirez, Andrea H, Casale, Francesco Paolo, Wolford, Brooke N, Guan, Li, Varshney, Arushi, Albanus, Ricardo D'Oliveira, Parker, Stephen C J, Narisu, Narisu, Chines, Peter S, Erdos, Michael R, Welch, Ryan P, Kinnunen, Leena, Saramies, Jouko, Sundvall, Jouko, Lakka, Timo A, Laakso, Markku, Tuomilehto, Jaakko, Koistinen, Heikki A, Stegle, Oliver, Boehnke, Michael, Birney, Ewan, Collins, Francis S
Published in PloS one (16.04.2018)
Published in PloS one (16.04.2018)
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Journal Article
Reverse engineering the neuroblastoma regulatory network uncovers MAX as one of the master regulators of tumor progression
Albanus, Ricardo D'Oliveira, Juliani Siqueira Dalmolin, Rodrigo, Alves Castro, Mauro Antônio, Augusto de Bittencourt Pasquali, Matheus, de Miranda Ramos, Vitor, Pens Gelain, Daniel, Fonseca Moreira, José Cláudio
Published in PloS one (05.12.2013)
Published in PloS one (05.12.2013)
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Journal Article
TREM2-independent microgliosis promotes tau-mediated neurodegeneration in the presence of ApoE4
Gratuze, Maud, Schlachetzki, Johannes C.M., D’Oliveira Albanus, Ricardo, Jain, Nimansha, Novotny, Brenna, Brase, Logan, Rodriguez, Lea, Mansel, Clayton, Kipnis, Michal, O’Brien, Sydney, Pasillas, Martina P., Lee, Choonghee, Manis, Melissa, Colonna, Marco, Harari, Oscar, Glass, Christopher K., Ulrich, Jason D., Holtzman, David M.
Published in Neuron (Cambridge, Mass.) (18.01.2023)
Published in Neuron (Cambridge, Mass.) (18.01.2023)
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Journal Article
Chromatin information content landscapes inform transcription factor and DNA interactions
D'Oliveira Albanus, Ricardo, Kyono, Yasuhiro, Hensley, John, Varshney, Arushi, Orchard, Peter, Kitzman, Jacob O, Parker, Stephen C J
Published in Nature communications (26.02.2021)
Published in Nature communications (26.02.2021)
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Journal Article
The genetic regulatory signature of type 2 diabetes in human skeletal muscle
Scott, Laura J, Erdos, Michael R, Huyghe, Jeroen R, Welch, Ryan P, Beck, Andrew T, Wolford, Brooke N, Chines, Peter S, Didion, John P, Narisu, Narisu, Stringham, Heather M, Taylor, D Leland, Jackson, Anne U, Vadlamudi, Swarooparani, Bonnycastle, Lori L, Kinnunen, Leena, Saramies, Jouko, Sundvall, Jouko, Albanus, Ricardo D'Oliveira, Kiseleva, Anna, Hensley, John, Crawford, Gregory E, Jiang, Hui, Wen, Xiaoquan, Watanabe, Richard M, Lakka, Timo A, Mohlke, Karen L, Laakso, Markku, Tuomilehto, Jaakko, Koistinen, Heikki A, Boehnke, Michael, Collins, Francis S, Parker, Stephen C J
Published in Nature communications (29.06.2016)
Published in Nature communications (29.06.2016)
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Journal Article
A Common Type 2 Diabetes Risk Variant Potentiates Activity of an Evolutionarily Conserved Islet Stretch Enhancer and Increases C2CD4A and C2CD4B Expression
Kycia, Ina, Wolford, Brooke N., Huyghe, Jeroen R., Fuchsberger, Christian, Vadlamudi, Swarooparani, Kursawe, Romy, Welch, Ryan P., Albanus, Ricardo d’Oliveira, Uyar, Asli, Khetan, Shubham, Lawlor, Nathan, Bolisetty, Mohan, Mathur, Anubhuti, Kuusisto, Johanna, Laakso, Markku, Ucar, Duygu, Mohlke, Karen L., Boehnke, Michael, Collins, Francis S., Parker, Stephen C.J., Stitzel, Michael L.
Published in American journal of human genetics (05.04.2018)
Published in American journal of human genetics (05.04.2018)
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Journal Article
CHD7 promotes neural progenitor differentiation in embryonic stem cells via altered chromatin accessibility and nascent gene expression
Yao, Hui, Hannum, Douglas F, Zhai, Yiwen, Hill, Sophie F, Albanus, Ricardo D 'Oliveira, Lou, Wenjia, Skidmore, Jennifer M, Sanchez, Gilson, Saiakhova, Alina, Bielas, Stephanie L, Scacheri, Peter, Ljungman, Mats, Parker, Stephen C J, Martin, Donna M
Published in Scientific reports (15.10.2020)
Published in Scientific reports (15.10.2020)
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Bridge: A New Algorithm for Rooting Orthologous Genes in Large-Scale Evolutionary Analyses
Campos, Leonardo R S, Trefflich, Sheyla, Morais, Diego A A, Imparato, Danilo O, Chagas, Vinicius S, Albanus, Ricardo D’Oliveira, Dalmolin, Rodrigo J S, Castro, Mauro A A
Published in Molecular biology and evolution (01.02.2024)
Published in Molecular biology and evolution (01.02.2024)
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Journal Article
Genetic effects on liver chromatin accessibility identify disease regulatory variants
Currin, Kevin W., Erdos, Michael R., Narisu, Narisu, Rai, Vivek, Vadlamudi, Swarooparani, Perrin, Hannah J., Idol, Jacqueline R., Yan, Tingfen, Albanus, Ricardo D’Oliveira, Broadaway, K. Alaine, Etheridge, Amy S., Bonnycastle, Lori L., Orchard, Peter, Didion, John P., Chaudhry, Amarjit S., Barnabas, Beatrice B., Black, Sean, Bouffard, Gerard G., Brooks, Shelise Y., Coleman, Holly, Dekhtyar, Lyudmila, Han, Joel, Ho, Shi-ling, Kim, Juyun, Legaspi, Richelle, Maduro, Quino L., Masiello, Catherine A., McDowell, Jennifer C., Montemayor, Casandra, Mullikin, James C., Park, Morgan, Riebow, Nancy L., Schandler, Karen, Schmidt, Brian, Sison, Christina, Stantripop, Sirintorn, Thomas, James W., Thomas, Pamela J., Vemulapalli, Meghana, Young, Alice C., Innocenti, Federico, Schuetz, Erin G., Scott, Laura J., Parker, Stephen C.J., Collins, Francis S., Mohlke, Karen L.
Published in American journal of human genetics (01.07.2021)
Published in American journal of human genetics (01.07.2021)
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Journal Article
Single-nucleus RNA-sequencing of autosomal dominant Alzheimer disease and risk variant carriers
Brase, Logan, You, Shih-Feng, D'Oliveira Albanus, Ricardo, Del-Aguila, Jorge L, Dai, Yaoyi, Novotny, Brenna C, Soriano-Tarraga, Carolina, Dykstra, Taitea, Fernandez, Maria Victoria, Budde, John P, Bergmann, Kristy, Morris, John C, Bateman, Randall J, Perrin, Richard J, McDade, Eric, Xiong, Chengjie, Goate, Alison M, Farlow, Martin, Sutherland, Greg T, Kipnis, Jonathan, Karch, Celeste M, Benitez, Bruno A, Harari, Oscar
Published in Nature communications (21.04.2023)
Published in Nature communications (21.04.2023)
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Journal Article
Global dynamics of stage-specific transcription factor binding during thymocyte development
Hosoya, Tomonori, D'Oliveira Albanus, Ricardo, Hensley, John, Myers, Greggory, Kyono, Yasuhiro, Kitzman, Jacob, Parker, Stephen C J, Engel, James Douglas
Published in Scientific reports (04.04.2018)
Published in Scientific reports (04.04.2018)
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Gene Expression Profile of NF-κB, Nrf2, Glycolytic, and p53 Pathways During the SH-SY5Y Neuronal Differentiation Mediated by Retinoic Acid
de Bittencourt Pasquali, Matheus Augusto, de Ramos, Vitor Miranda, Albanus, Ricardo D′Oliveira, Kunzler, Alice, de Souza, Luis Henrinque Trentin, Dalmolin, Rodrigo Juliani Siqueira, Gelain, Daniel Pens, Ribeiro, Leila, Carro, Luigi, Moreira, José Cláudio Fonseca
Published in Molecular neurobiology (01.01.2016)
Published in Molecular neurobiology (01.01.2016)
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Antioxidant and Anti-Inflammatory Properties of Anacardium occidentale Leaf Extract
Dalmolin, Rodrigo Juliani Siqueira, Pasquali, Matheus Augusto de Bittencourt, Moreira, José Cláudio Fonseca, Zucolotto, Silvana Maria, Camillo, Christina da Silva, Amarante, Maria do Socorro Medeiros, D’Oliveira Albanus, Ricardo, Morrone, Maurilio da Silva, de Oliveira, Juliana Medeiros, Souza, Natália Cabral, Gelain, Daniel Pens
Published in Evidence-based complementary and alternative medicine (01.01.2017)
Published in Evidence-based complementary and alternative medicine (01.01.2017)
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Reverse Engineering of the Pediatric Sepsis Regulatory Network and Identification of Master Regulators
Oliveira, Raffael Azevedo de Carvalho, Imparato, Danilo Oliveira, Fernandes, Vítor Gabriel Saldanha, Cavalcante, João Vitor Ferreira, Albanus, Ricardo D’Oliveira, Dalmolin, Rodrigo Juliani Siqueira
Published in Biomedicines (23.09.2021)
Published in Biomedicines (23.09.2021)
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Journal Article
Turnera subulata Anti-Inflammatory Properties in Lipopolysaccharide-Stimulated RAW 264.7 Macrophages
Souza, Natália Cabral, de Oliveira, Juliana Medeiros, Morrone, Maurílio da Silva, Albanus, Ricardo D'Oliveira, Amarante, Maria do Socorro Medeiros, Camillo, Christina da Silva, Langassner, Silvana Maria Zucolotto, Gelain, Daniel Pens, Moreira, José Cláudio Fonseca, Dalmolin, Rodrigo Juliani Siqueira, de Bittencourt Pasquali, Matheus Augusto
Published in Journal of medicinal food (01.10.2016)
Published in Journal of medicinal food (01.10.2016)
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Differential Evolutionary Constraints in the Evolution of Chemoreceptors: A Murine and Human Case Study
Fonseca Moreira, José Cláudio, Alves Castro, Mauro Antônio, Rybarczyk-Filho, José Luiz, Siqueira Dalmolin, Rodrigo Juliani, D’Oliveira Albanus, Ricardo
Published in TheScientificWorld (01.01.2014)
Published in TheScientificWorld (01.01.2014)
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Journal Article
A Transcription Start Site Map in Human Pancreatic Islets Reveals Functional Regulatory Signatures
Varshney, Arushi, Kyono, Yasuhiro, Elangovan, Venkateswaran Ramamoorthi, Wang, Collin, Erdos, Michael R, Narisu, Narisu, Albanus, Ricardo D'Oliveira, Orchard, Peter, Stitzel, Michael L, Collins, Francis S, Kitzman, Jacob O, Parker, Stephen C J
Published in Diabetes (New York, N.Y.) (01.07.2021)
Published in Diabetes (New York, N.Y.) (01.07.2021)
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Journal Article
213-OR: Widespread Age-Associated Changes in the Chromatin Architecture of Skeletal Muscle Cell Types
Moo, Keagan G, Albanus, Ricardo D'Oliveira, Varshney, Arushi, Orchard, Peter, Manickam, Nandini, Laakso, Markku, Tuomilehto, Jaakko, Lakka, Timo A, Mohlke, Karen L, Boehnke, Michael, Scott, Laura, Koistinen, Heikki A, Collins, Francis S, Parker, Stephen
Published in Diabetes (New York, N.Y.) (01.06.2024)
Published in Diabetes (New York, N.Y.) (01.06.2024)
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Journal Article
Ambient RNA from CSF to capture brain cell‐type signatures in AD and other neurodegenerative diseases
Kaczaral, Jacqueline, Buss, Jared, Eteleeb, Abdallah, Novotny, Brenna C, D'Oliveira Albanus, Ricardo, Brase, Logan, Benitez, Bruno A., Karch, Celeste M., Piccio, Laura, Ter‐Ovanesyan, Dima, Harari, Oscar
Published in Alzheimer's & dementia (01.12.2023)
Published in Alzheimer's & dementia (01.12.2023)
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Journal Article
Microglia transcriptional heterogeneity across human and experimental models
Garg, Anjali, Novotny, Brenna C, D'Oliveira Albanus, Ricardo, Brase, Logan, Karch, Celeste M., Morris, John C, Perrin, Richard J., Sutherland, Greg T, Benitez, Bruno A., Harari, Oscar
Published in Alzheimer's & dementia (01.12.2023)
Published in Alzheimer's & dementia (01.12.2023)
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