Phylogenetic Analysis of SARS-CoV-2 Data Is Difficult
Morel, Benoit, Barbera, Pierre, Czech, Lucas, Bettisworth, Ben, Hübner, Lukas, Lutteropp, Sarah, Serdari, Dora, Kostaki, Evangelia-Georgia, Mamais, Ioannis, Kozlov, Alexey M, Pavlidis, Pavlos, Paraskevis, Dimitrios, Stamatakis, Alexandros
Published in Molecular biology and evolution (01.05.2021)
Published in Molecular biology and evolution (01.05.2021)
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Journal Article
Genetic diversity loss in the Anthropocene
Exposito-Alonso, Moises, Booker, Tom R, Czech, Lucas, Gillespie, Lauren, Hateley, Shannon, Kyriazis, Christopher C, Lang, Patricia L M, Leventhal, Laura, Nogues-Bravo, David, Pagowski, Veronica, Ruffley, Megan, Spence, Jeffrey P, Toro Arana, Sebastian E, Weiß, Clemens L, Zess, Erin
Published in Science (American Association for the Advancement of Science) (23.09.2022)
Published in Science (American Association for the Advancement of Science) (23.09.2022)
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Journal Article
Long‐read metabarcoding of the eukaryotic rDNA operon to phylogenetically and taxonomically resolve environmental diversity
Jamy, Mahwash, Foster, Rachel, Barbera, Pierre, Czech, Lucas, Kozlov, Alexey, Stamatakis, Alexandros, Bending, Gary, Hilton, Sally, Bass, David, Burki, Fabien
Published in Molecular ecology resources (01.03.2020)
Published in Molecular ecology resources (01.03.2020)
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Journal Article
Wide-ranging consequences of priority effects governed by an overarching factor
Chappell, Callie R, Dhami, Manpreet K, Bitter, Mark C, Czech, Lucas, Herrera Paredes, Sur, Barrie, Fatoumata Binta, Calderón, Yadira, Eritano, Katherine, Golden, Lexi-Ann, Hekmat-Scafe, Daria, Hsu, Veronica, Kieschnick, Clara, Malladi, Shyamala, Rush, Nicole, Fukami, Tadashi
Published in eLife (27.10.2022)
Published in eLife (27.10.2022)
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Journal Article
Metagenomic Analysis Using Phylogenetic Placement—A Review of the First Decade
Czech, Lucas, Stamatakis, Alexandros, Dunthorn, Micah, Barbera, Pierre
Published in Frontiers in bioinformatics (26.05.2022)
Published in Frontiers in bioinformatics (26.05.2022)
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Journal Article
Parasites dominate hyperdiverse soil protist communities in Neotropical rainforests
Mahé, Frédéric, de Vargas, Colomban, Bass, David, Czech, Lucas, Stamatakis, Alexandros, Lara, Enrique, Singer, David, Mayor, Jordan, Bunge, John, Sernaker, Sarah, Siemensmeyer, Tobias, Trautmann, Isabelle, Romac, Sarah, Berney, Cédric, Kozlov, Alexey, Mitchell, Edward A. D., Seppey, Christophe V. W., Egge, Elianne, Lentendu, Guillaume, Wirth, Rainer, Trueba, Gabriel, Dunthorn, Micah
Published in Nature ecology & evolution (20.03.2017)
Published in Nature ecology & evolution (20.03.2017)
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Journal Article
UniEuk: Time to Speak a Common Language in Protistology
Berney, Cédric, Ciuprina, Andreea, Bender, Sara, Brodie, Juliet, Edgcomb, Virginia, Kim, Eunsoo, Rajan, Jeena, Parfrey, Laura Wegener, Adl, Sina, Audic, Stéphane, Bass, David, Caron, David A., Cochrane, Guy, Czech, Lucas, Dunthorn, Micah, Geisen, Stefan, Glöckner, Frank Oliver, Mahé, Frédéric, Quast, Christian, Kaye, Jonathan Z., Simpson, Alastair G. B., Stamatakis, Alexandros, Campo, Javier, Yilmaz, Pelin, Vargas, Colomban
Published in The Journal of eukaryotic microbiology (01.05.2017)
Published in The Journal of eukaryotic microbiology (01.05.2017)
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Journal Article
EPA-ng: Massively Parallel Evolutionary Placement of Genetic Sequences
Barbera, Pierre, Kozlov, Alexey M., Czech, Lucas, Morel, Benoit, Darriba, Diego, Flouri, Tomáš, Stamatakis, Alexandros
Published in Systematic biology (01.03.2019)
Published in Systematic biology (01.03.2019)
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Journal Article
Swarm v3: towards tera-scale amplicon clustering
Mahé, Frédéric, Czech, Lucas, Stamatakis, Alexandros, Quince, Christopher, de Vargas, Colomban, Dunthorn, Micah, Rognes, Torbjørn
Published in Bioinformatics (01.01.2022)
Published in Bioinformatics (01.01.2022)
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Journal Article
A Critical Review on the Use of Support Values in Tree Viewers and Bioinformatics Toolkits
Czech, Lucas, Huerta-Cepas, Jaime, Stamatakis, Alexandros
Published in Molecular biology and evolution (01.06.2017)
Published in Molecular biology and evolution (01.06.2017)
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Journal Article
grenedalf: population genetic statistics for the next generation of pool sequencing
Czech, Lucas, Spence, Jeffrey P, Expósito-Alonso, Moisés
Published in Bioinformatics (Oxford, England) (26.08.2024)
Published in Bioinformatics (Oxford, England) (26.08.2024)
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Journal Article
SCRAPP: A tool to assess the diversity of microbial samples from phylogenetic placements
Barbera, Pierre, Czech, Lucas, Lutteropp, Sarah, Stamatakis, Alexandros
Published in Molecular ecology resources (01.01.2021)
Published in Molecular ecology resources (01.01.2021)
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Journal Article
The Windblown: Possible Explanations for Dinophyte DNA in Forest Soils
Gottschling, Marc, Czech, Lucas, Mahé, Frédéric, Adl, Sina, Dunthorn, Micah
Published in The Journal of eukaryotic microbiology (01.01.2021)
Published in The Journal of eukaryotic microbiology (01.01.2021)
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Journal Article
Clarifying the Relationships between Microsporidia and Cryptomycota
Bass, David, Czech, Lucas, Williams, Bryony A. P., Berney, Cédric, Dunthorn, Micah, Mahé, Frederic, Torruella, Guifré, Stentiford, Grant D., Williams, Tom A.
Published in The Journal of eukaryotic microbiology (01.11.2018)
Published in The Journal of eukaryotic microbiology (01.11.2018)
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Journal Article