Anacapa Toolkit: An environmental DNA toolkit for processing multilocus metabarcode datasets
Curd, Emily E., Gold, Zack, Kandlikar, Gaurav S., Gomer, Jesse, Ogden, Max, O'Connell, Taylor, Pipes, Lenore, Schweizer, Teia M., Rabichow, Laura, Lin, Meixi, Shi, Baochen, Barber, Paul H., Kraft, Nathan, Wayne, Robert, Meyer, Rachel S., Yu, Douglas
Published in Methods in ecology and evolution (01.09.2019)
Published in Methods in ecology and evolution (01.09.2019)
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Journal Article
Bacterial diversity is positively correlated with soil heterogeneity
Curd, Emily E., Martiny, Jennifer B. H., Li, Huiying, Smith, Thomas B.
Published in Ecosphere (Washington, D.C) (01.01.2018)
Published in Ecosphere (Washington, D.C) (01.01.2018)
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Journal Article
ranacapa: An R package and Shiny web app to explore environmental DNA data with exploratory statistics and interactive visualizations [version 1; peer review: 1 approved, 2 approved with reservations]
Kandlikar, Gaurav S, Gold, Zachary J, Cowen, Madeline C, Meyer, Rachel S, Freise, Amanda C, Kraft, Nathan J.B, Moberg-Parker, Jordan, Sprague, Joshua, Kushner, David J, Curd, Emily E
Published in F1000 research (2018)
Published in F1000 research (2018)
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Journal Article
A manager's guide to using eDNA metabarcoding in marine ecosystems
Gold, Zachary, Wall, Adam R, Schweizer, Teia M, Pentcheff, N Dean, Curd, Emily E, Barber, Paul H, Meyer, Rachel S, Wayne, Robert, Stolzenbach, Kevin, Prickett, Kat, Luedy, Justin, Wetzer, Regina
Published in PeerJ (San Francisco, CA) (15.11.2022)
Published in PeerJ (San Francisco, CA) (15.11.2022)
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Journal Article
rCRUX: A rapid and versatile tool for generating metabarcoding reference libraries in R
Curd, Emily E., Gal, Luna, Gallego, Ramon, Silliman, Katherine, Nielsen, Shaun, Gold, Zachary
Published in Environmental DNA (Hoboken, N.J.) (01.01.2024)
Published in Environmental DNA (Hoboken, N.J.) (01.01.2024)
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Journal Article
The CALeDNA program: Citizen scientists and researchers inventory California's biodiversity
Meyer, Rachel S, Ramos, Miroslava Munguia, Lin, Meixi, Schweizer, Teia M, Gold, Zachary, Ramos, Dannise Ruiz, Shirazi, Sabrina, Kandlikar, Gaurav, Kwan, Wai-Yin, Curd, Emily E, Freise, Amanda, Parker, Jordan Moberg, Sexton, Jason P, Wetzer, Regina, Pentcheff, N. Dean, Wall, Adam R, Pipes, Lenore, Garcia-Vedrenne, Ana, Mejia, Maura Palacios, Moore, Tiara, Orland, Chloe, Ballare, Kimberly M, Worth, Anna, Beraut, Eric, Aronson, Emma L, Nielsen, Rasmus, Lewin, Harris A, Barber, Paul H, Wall, Jeff, Kraft, Nathan, Shapiro, Beth, Wayne, Robert K
Published in Berkeley undergraduate journal of classics (01.03.2021)
Published in Berkeley undergraduate journal of classics (01.03.2021)
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Journal Article
Mapping the risk of avian influenza in wild birds in the US
Fuller, Trevon L, Saatchi, Sassan S, Curd, Emily E, Toffelmier, Erin, Thomassen, Henri A, Buermann, Wolfgang, DeSante, David F, Nott, Mark P, Saracco, James F, Ralph, Cj, Alexander, John D, Pollinger, John P, Smith, Thomas B
Published in BMC infectious diseases (23.06.2010)
Published in BMC infectious diseases (23.06.2010)
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Journal Article
Improving metabarcoding taxonomic assignment: A case study of fishes in a large marine ecosystem
Gold, Zachary, Curd, Emily E., Goodwin, Kelly D., Choi, Emma S., Frable, Benjamin W., Thompson, Andrew R., Walker, Harold J., Burton, Ronald S., Kacev, Dovi, Martz, Lucas D., Barber, Paul H.
Published in Molecular ecology resources (01.10.2021)
Published in Molecular ecology resources (01.10.2021)
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Journal Article
Landscape analyses using eDNA metabarcoding and Earth observation predict community biodiversity in California
Lin, Meixi, Simons, Ariel Levi, Harrigan, Ryan J, Curd, Emily E, Schneider, Fabian D, Ruiz-Ramos, Dannise V, Gold, Zack, Osborne, Melisa G, Shirazi, Sabrina, Schweizer, Teia M, Moore, Tiara N, Fox, Emma A, Turba, Rachel, Garcia-Vedrenne, Ana E, Helman, Sarah K, Rutledge, Kelsi, Mejia, Maura Palacios, Marwayana, Onny, Munguia Ramos, Miroslava N, Wetzer, Regina, Pentcheff, N Dean, McTavish, Emily Jane, Dawson, Michael N, Shapiro, Beth, Wayne, Robert K, Meyer, Rachel S
Published in Ecological applications (01.09.2021)
Published in Ecological applications (01.09.2021)
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Journal Article
Conservation of Mojave Desert springs and associated biota: status, threats, and policy opportunities
Parker, Sophie S., Zdon, Andy, Christian, William T., Cohen, Brian S., Palacios Mejia, Maura, Fraga, Naomi S., Curd, Emily E., Edalati, Kiumars, Renshaw, Mark A.
Published in Biodiversity and conservation (01.02.2021)
Published in Biodiversity and conservation (01.02.2021)
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Journal Article
eDNA metabarcoding bioassessment of endangered fairy shrimp (Branchinecta spp.)
Gold, Zachary, Wall, Adam R., Curd, Emily E., Kelly, Ryan P., Pentcheff, N. Dean, Ripma, Lee, Barber, Paul H., Wetzer, Regina
Published in Conservation genetics resources (01.12.2020)
Published in Conservation genetics resources (01.12.2020)
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Journal Article
Economic Implications of Optimal Diagnosis and Treatment of Sepsis - Work in Progress: Marginal Penalties, Antibiotic Alterations, and Outcome Hypotheses
Kost, Gerald J., Tang, Zuping, Tran, Nam K., Curd, Emily E., Louie, Richard F., Albertson, Timothy E., Derlet, Robert W., Azari, Rahman
Published in Scandinavian journal of clinical and laboratory investigation (2003)
Published in Scandinavian journal of clinical and laboratory investigation (2003)
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Journal Article
A Biodiversity Composition Map of California Derived from Environmental DNA Metabarcoding and Earth Observation
Lin, Meixi, Ariel Levi Simons, Curd, Emily E, Harrigan, Ryan J, Schneider, Fabian D, Ruiz-Ramos, Dannise V, Gold, Zack, Osborne, Melisa G, Shirazi, Sabrina, Schweizer, Teia M, Moore, Tiara N, Fox, Emma A, Turba, Rachel, Garcia-Vedrenne, Ana E, Helman, Sarah K, Rutledge, Kelsi, Maura Palacios Mejia, Munguia Ramos, Miroslava N, Wetzer, Regina, Pentcheff, Dean, Mctavish, Emily Jane, Dawson, Michael N, Shapiro, Beth, Wayne, Robert K, Meyer, Rachel S
Published in bioRxiv (20.06.2020)
Published in bioRxiv (20.06.2020)
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Paper
The California Environmental DNA "CALeDNA" Program
Meyer, Rachel, Curd, Emily E, Schweizer, Teia, Gold, Zack, Dannise Ruiz Ramos, Shirazi, Sabrina, Kandlikar, Gaurav, Wai-Yin, Kwan, Lin, Meixi, Friese, Amanda, Moberg-Parker, Jordan, Miroslava Munguia Ramos, Shapiro, Beth, Sexton, Jason, Pipes, Lenore, Ana Garcia Vedrenne, Maura Palacios Mejia, Aronson, Emma, Moore, Tiara, Nielsen, Rasmus, Lewin, Harris, Barber, Paul, Wall, Jeff, Kraft, Nathan, Wayne, Robert
Published in bioRxiv (04.01.2019)
Published in bioRxiv (04.01.2019)
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Paper