High-throughput sequencing of Arabidopsis microRNAs: evidence for frequent birth and death of MIRNA genes
Fahlgren, Noah, Howell, Miya D, Kasschau, Kristin D, Chapman, Elisabeth J, Sullivan, Christopher M, Cumbie, Jason S, Givan, Scott A, Law, Theresa F, Grant, Sarah R, Dangl, Jeffery L, Carrington, James C
Published in PloS one (14.02.2007)
Published in PloS one (14.02.2007)
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The genome of tolypocladium inflatum: evolution, organization, and expression of the cyclosporin biosynthetic gene cluster
Bushley, Kathryn E, Raja, Rajani, Jaiswal, Pankaj, Cumbie, Jason S, Nonogaki, Mariko, Boyd, Alexander E, Owensby, C Alisha, Knaus, Brian J, Elser, Justin, Miller, Daniel, Di, Yanming, McPhail, Kerry L, Spatafora, Joseph W
Published in PLoS genetics (01.06.2013)
Published in PLoS genetics (01.06.2013)
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Environmental Stresses Modulate Abundance and Timing of Alternatively Spliced Circadian Transcripts in Arabidopsis
Filichkin, Sergei A., Cumbie, Jason S., Dharmawardhana, Palitha, Jaiswal, Pankaj, Chang, Jeff H., Palusa, Saiprasad G., Reddy, A.S.N., Megraw, Molly, Mockler, Todd C.
Published in Molecular plant (01.02.2015)
Published in Molecular plant (01.02.2015)
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Genome-wide profiling and analysis of Arabidopsis siRNAs
Kasschau, Kristin D, Fahlgren, Noah, Chapman, Elisabeth J, Sullivan, Christopher M, Cumbie, Jason S, Givan, Scott A, Carrington, James C
Published in PLoS biology (01.03.2007)
Published in PLoS biology (01.03.2007)
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Length bias correction in gene ontology enrichment analysis using logistic regression
Mi, Gu, Di, Yanming, Emerson, Sarah, Cumbie, Jason S, Chang, Jeff H
Published in PloS one (02.10.2012)
Published in PloS one (02.10.2012)
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Computational and analytical framework for small RNA profiling by high-throughput sequencing
Fahlgren, Noah, Sullivan, Christopher M, Kasschau, Kristin D, Chapman, Elisabeth J, Cumbie, Jason S, Montgomery, Taiowa A, Gilbert, Sunny D, Dasenko, Mark, Backman, Tyler W H, Givan, Scott A, Carrington, James C
Published in RNA (Cambridge) (01.05.2009)
Published in RNA (Cambridge) (01.05.2009)
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Variable suites of non-effector genes are co-regulated in the type III secretion virulence regulon across the Pseudomonas syringae phylogeny
Mucyn, Tatiana S, Yourstone, Scott, Lind, Abigail L, Biswas, Surojit, Nishimura, Marc T, Baltrus, David A, Cumbie, Jason S, Chang, Jeff H, Jones, Corbin D, Dangl, Jeffery L, Grant, Sarah R
Published in PLoS pathogens (01.01.2014)
Published in PLoS pathogens (01.01.2014)
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GENE-counter: a computational pipeline for the analysis of RNA-Seq data for gene expression differences
Cumbie, Jason S, Kimbrel, Jeffrey A, Di, Yanming, Schafer, Daniel W, Wilhelm, Larry J, Fox, Samuel E, Sullivan, Christopher M, Curzon, Aron D, Carrington, James C, Mockler, Todd C, Chang, Jeff H
Published in PloS one (06.10.2011)
Published in PloS one (06.10.2011)
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Small Genetic Circuits and MicroRNAs: Big Players in Polymerase II Transcriptional Control in Plants
Megraw, Molly, Cumbie, Jason S., Ivanchenko, Maria G., Filichkin, Sergei A.
Published in The Plant cell (01.02.2016)
Published in The Plant cell (01.02.2016)
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Genome-Wide Analysis of the RNA-DEPENDENT RNA POLYMERASE6/DICER-LIKE4 Pathway in Arabidopsis Reveals Dependency on miRNA- and tasiRNA-Directed Targeting
Howell, Miya D, Fahlgren, Noah, Chapman, Elisabeth J, Cumbie, Jason S, Sullivan, Christopher M, Givan, Scott A, Kasschau, Kristin D, Carrington, James C
Published in The Plant cell (01.03.2007)
Published in The Plant cell (01.03.2007)
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Update of ASRP: the Arabidopsis Small RNA Project database
Backman, Tyler W.H, Sullivan, Christopher M, Cumbie, Jason S, Miller, Zachary A, Chapman, Elisabeth J, Fahlgren, Noah, Givan, Scott A, Carrington, James C, Kasschau, Kristin D
Published in Nucleic acids research (01.01.2008)
Published in Nucleic acids research (01.01.2008)
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Distinct Expression Patterns of Natural Antisense Transcripts in Arabidopsis1[C][W]
Henz, Stefan R, Cumbie, Jason S, Kasschau, Kristin D, Lohmann, Jan U
Published in Plant physiology (Bethesda) (01.07.2007)
Published in Plant physiology (Bethesda) (01.07.2007)
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Variable Suites of Non-effector Genes Are Co-regulated in the Type III Secretion Virulence Regulon across the Pseudomonas syringae Phylogeny: e1003807
Mucyn, Tatiana S, Yourstone, Scott, Lind, Abigail L, Biswas, Surojit, Nishimura, Marc T, Baltrus, David A, Cumbie, Jason S, Chang, Jeff H, Jones, Corbin D, Dangl, Jeffery L, Grant, Sarah R
Published in PLoS pathogens (01.01.2014)
Published in PLoS pathogens (01.01.2014)
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The Genome of Tolypocladium inflatum: Evolution, Organization, and Expression of the Cyclosporin Biosynthetic Gene Cluster: e1003496
Bushley, Kathryn E, Raja, Rajani, Jaiswal, Pankaj, Cumbie, Jason S, Nonogaki, Mariko, Boyd, Alexander E, Owensby, C Alisha, Knaus, Brian J, Elser, Justin, Miller, Daniel, Di, Yanming, McPhail, Kerry L, Spatafora, Joseph W
Published in PLoS genetics (01.06.2013)
Published in PLoS genetics (01.06.2013)
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