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Agrobacterium tumefaciens-mediated transformation of oleaginous yeast Lipomyces species
Dai, Ziyu, Deng, Shuang, Culley, David E., Bruno, Kenneth S., Magnuson, Jon K.
Published in Applied microbiology and biotechnology (01.08.2017)
Published in Applied microbiology and biotechnology (01.08.2017)
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Current Production and Metal Oxide Reduction by Shewanella oneidensis MR-1 Wild Type and Mutants
Bretschger, Orianna, Obraztsova, Anna, Sturm, Carter A, Chang, In Seop, Gorby, Yuri A, Reed, Samantha B, Culley, David E, Reardon, Catherine L, Barua, Soumitra, Romine, Margaret F, Zhou, Jizhong, Beliaev, Alexander S, Bouhenni, Rachida, Saffarini, Daad, Mansfeld, Florian, Kim, Byung-Hong, Fredrickson, James K, Nealson, Kenneth H
Published in Applied and Environmental Microbiology (01.11.2007)
Published in Applied and Environmental Microbiology (01.11.2007)
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Electrically Conductive Bacterial Nanowires Produced by Shewanella oneidensis Strain MR-1 and Other Microorganisms
Gorby, Yuri A., Yanina, Svetlana, McLean, Jeffrey S., Rosso, Kevin M., Moyles, Dianne, Dohnalkova, Alice, Beveridge, Terry J., Chang, In Seop, Kim, Byung Hong, Kim, Kyung Shik, Culley, David E., Reed, Samantha B., Romine, Margaret F., Saffarini, Daad A., Hill, Eric A., Shi, Liang, Elias, Dwayne A., Kennedy, David W., Pinchuk, Grigoriy, Watanabe, Kazuya, Ishii, Shun'ichi, Logan, Bruce, Nealson, Kenneth H., Fredrickson, Jim K.
Published in Proceedings of the National Academy of Sciences - PNAS (25.07.2006)
Published in Proceedings of the National Academy of Sciences - PNAS (25.07.2006)
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Environmental Genomics Reveals a Single-Species Ecosystem Deep Within Earth
Chivian, Dylan, Brodie, Eoin L, Alm, Eric J, Culley, David E, Dehal, Paramvir S, DeSantis, Todd Z, Gihring, Thomas M, Lapidus, Alla, Lin, Li-Hung, Lowry, Stephen R, Moser, Duane P, Richardson, Paul M, Southam, Gordon, Wanger, Greg, Pratt, Lisa M, Andersen, Gary L, Hazen, Terry C, Brockman, Fred J, Arkin, Adam P, Onstott, Tullis C
Published in Science (American Association for the Advancement of Science) (10.10.2008)
Published in Science (American Association for the Advancement of Science) (10.10.2008)
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Tracking the roots of cellulase hyperproduction by the fungus Trichoderma reesei using massively parallel DNA sequencing
Le Crom, Stéphane, Schackwitz, Wendy, Pennacchio, Len, Magnuson, Jon K, Culley, David E, Collett, James R, Martin, Joel, Druzhinina, Irina S, Mathis, Hugues, Monot, Frédéric, Seiboth, Bernhard, Cherry, Barbara, Rey, Michael, Berka, Randy, Kubicek, Christian P, Baker, Scott E, Margeot, Antoine
Published in Proceedings of the National Academy of Sciences - PNAS (22.09.2009)
Published in Proceedings of the National Academy of Sciences - PNAS (22.09.2009)
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Increased production of fatty acids and triglycerides in Aspergillus oryzae by enhancing expressions of fatty acid synthesis-related genes
Tamano, Koichi, Bruno, Kenneth S., Karagiosis, Sue A., Culley, David E., Deng, Shuang, Collett, James R., Umemura, Myco, Koike, Hideaki, Baker, Scott E., Machida, Masayuki
Published in Applied microbiology and biotechnology (01.01.2013)
Published in Applied microbiology and biotechnology (01.01.2013)
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Integrative Analysis of Transcriptomic and Proteomic Data: Challenges, Solutions and Applications
Nie, Lei, Wu, Gang, Culley, David E., Scholten, Johannes C. M., Zhang, Weiwen
Published in Critical reviews in biotechnology (01.04.2007)
Published in Critical reviews in biotechnology (01.04.2007)
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Deletion of the KU70 homologue facilitates gene targeting in Lipomyces starkeyi strain NRRL Y-11558
Dai, Ziyu, Pomraning, Kyle R., Deng, Shuang, Hofstad, Beth A., Panisko, Ellen A., Rodriguez, Diana, Butcher, Mark G., Culley, David E., Magnuson, Jon K.
Published in Current genetics (01.02.2019)
Published in Current genetics (01.02.2019)
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c-Type Cytochrome-Dependent Formation of U(IV) Nanoparticles by Shewanella oneidensis
Marshall, Matthew J, Beliaev, Alexander S, Dohnalkova, Alice C, Kennedy, David W, Shi, Liang, Wang, Zheming, Boyanov, Maxim I, Lai, Barry, Kemner, Kenneth M, McLean, Jeffrey S, Reed, Samantha B, Culley, David E, Bailey, Vanessa L, Simonson, Cody J, Saffarini, Daad A, Romine, Margaret F, Zachara, John M, Fredrickson, James K
Published in PLoS biology (01.08.2006)
Published in PLoS biology (01.08.2006)
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Phototrophic Co-cultures From Extreme Environments: Community Structure and Potential Value for Fundamental and Applied Research
Shaw, Claire, Brooke, Charles, Hawley, Erik, Connolly, Morgan P., Garcia, Javier A., Harmon-Smith, Miranda, Shapiro, Nicole, Barton, Michael, Tringe, Susannah G., Glavina del Rio, Tijana, Culley, David E., Castenholz, Richard, Hess, Matthias
Published in Frontiers in microbiology (06.11.2020)
Published in Frontiers in microbiology (06.11.2020)
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Utilization of DNA as a Sole Source of Phosphorus, Carbon, and Energy by Shewanella spp.: Ecological and Physiological Implications for Dissimilatory Metal Reduction
Pinchuk, Grigoriy E, Ammons, Christine, Culley, David E, Li, Shu-Mei W, McLean, Jeff S, Romine, Margaret F, Nealson, Kenneth H, Fredrickson, Jim K, Beliaev, Alexander S
Published in Applied and Environmental Microbiology (01.02.2008)
Published in Applied and Environmental Microbiology (01.02.2008)
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Increased production of free fatty acids in Aspergillus oryzae by disruption of a predicted acyl-CoA synthetase gene
Tamano, Koichi, Bruno, Kenneth S, Koike, Hideaki, Ishii, Tomoko, Miura, Ai, Umemura, Myco, Culley, David E, Baker, Scott E, Machida, Masayuki
Published in Applied microbiology and biotechnology (01.04.2015)
Published in Applied microbiology and biotechnology (01.04.2015)
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Evolution of the syntrophic interaction between Desulfovibrio vulgaris and Methanosarcina barkeri: Involvement of an ancient horizontal gene transfer
Scholten, Johannes C., Culley, David E., Brockman, Fred J., Wu, Gang, Zhang, Weiwen
Published in Biochemical and biophysical research communications (05.01.2007)
Published in Biochemical and biophysical research communications (05.01.2007)
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Global transcriptomic analysis of Desulfovibrio vulgaris on different electron donors
Zhang, Weiwen, Culley, David E, Scholten, Johannes C. M, Hogan, Mike, Vitiritti, Luigi, Brockman, Fred J
Published in Antonie van Leeuwenhoek (01.02.2006)
Published in Antonie van Leeuwenhoek (01.02.2006)
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Transcriptomic analysis of the oleaginous yeast Lipomyces starkeyi during lipid accumulation on enzymatically treated corn stover hydrolysate
Pomraning, Kyle R., Collett, James R., Kim, Joonhoon, Panisko, Ellen A., Culley, David E., Dai, Ziyu, Deng, Shuang, Hofstad, Beth A., Butcher, Mark G., Magnuson, Jon K.
Published in Biotechnology for biofuels (26.06.2019)
Published in Biotechnology for biofuels (26.06.2019)
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The genome of Syntrophomonas wolfei: new insights into syntrophic metabolism and biohydrogen production
Sieber, Jessica R., Sims, David R., Han, Cliff, Kim, Edwin, Lykidis, Athanasios, Lapidus, Alla L., McDonnald, Erin, Rohlin, Lars, Culley, David E., Gunsalus, Robert, McInerney, Michael J.
Published in Environmental microbiology (01.08.2010)
Published in Environmental microbiology (01.08.2010)
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mRNA-targeted fluorescent in situ hybridization (FISH) of Gram-negative bacteria without template amplification or tyramide signal amplification
Coleman, James R., Culley, David E., Chrisler, William B., Brockman, Fred J.
Published in Journal of microbiological methods (01.12.2007)
Published in Journal of microbiological methods (01.12.2007)
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The mitochondrial genome of the ethanol-metabolizing, wine cellar mold Zasmidium cellare is the smallest for a filamentous ascomycete
Goodwin, Stephen B., McCorison, Cassandra B., Cavaletto, Jessica R., Culley, David E., LaButti, Kurt, Baker, Scott E., Grigoriev, Igor V.
Published in Fungal biology (01.08.2016)
Published in Fungal biology (01.08.2016)
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Analyzing protease specificity and detecting in vivo proteolytic events using tandem mass spectrometry
Gupta, Nitin, Hixson, Kim K, Culley, David E, Smith, Richard D, Pevzner, Pavel A
Published in Proteomics (Weinheim) (01.08.2010)
Published in Proteomics (Weinheim) (01.08.2010)
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