Repeated horizontal gene transfers triggered parallel evolution of magnetotaxis in two evolutionary divergent lineages of magnetotactic bacteria
Monteil, Caroline L., Grouzdev, Denis S., Perrière, Guy, Alonso, Béatrice, Rouy, Zoé, Cruveiller, Stéphane, Ginet, Nicolas, Pignol, David, Lefevre, Christopher T.
Published in The ISME Journal (01.07.2020)
Published in The ISME Journal (01.07.2020)
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Journal Article
Chemical Evolution of a Bacterium's Genome
Marlière, Philippe, Patrouix, Julien, Döring, Volker, Herdewijn, Piet, Tricot, Sabine, Cruveiller, Stéphane, Bouzon, Madeleine, Mutzel, Rupert
Published in Angewandte Chemie International Edition (25.07.2011)
Published in Angewandte Chemie International Edition (25.07.2011)
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Journal Article
The genome of the obligate endobacterium of an AM fungus reveals an interphylum network of nutritional interactions
Ghignone, Stefano, Salvioli, Alessandra, Anca, Iulia, Lumini, Erica, Ortu, Giuseppe, Petiti, Luca, Cruveiller, Stéphane, Bianciotto, Valeria, Piffanelli, Pietro, Lanfranco, Luisa, Bonfante, Paola
Published in The ISME Journal (01.01.2012)
Published in The ISME Journal (01.01.2012)
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Journal Article
Comparative genomics of 43 strains of Xanthomonas citri pv. citri reveals the evolutionary events giving rise to pathotypes with different host ranges
Gordon, Jonathan L, Lefeuvre, Pierre, Escalon, Aline, Barbe, Valérie, Cruveiller, Stéphane, Gagnevin, Lionel, Pruvost, Olivier
Published in BMC genomics (23.12.2015)
Published in BMC genomics (23.12.2015)
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Journal Article
Genomic analysis of smooth tubercle bacilli provides insights into ancestry and pathoadaptation of Mycobacterium tuberculosis
Supply, Philip, Marceau, Michael, Mangenot, Sophie, Roche, David, Rouanet, Carine, Khanna, Varun, Majlessi, Laleh, Criscuolo, Alexis, Tap, Julien, Pawlik, Alexandre, Fiette, Laurence, Orgeur, Mickael, Fabre, Michel, Parmentier, Cécile, Frigui, Wafa, Simeone, Roxane, Boritsch, Eva C, Debrie, Anne-Sophie, Willery, Eve, Walker, Danielle, Quail, Michael A, Ma, Laurence, Bouchier, Christiane, Salvignol, Grégory, Sayes, Fadel, Cascioferro, Alessandro, Seemann, Torsten, Barbe, Valérie, Locht, Camille, Gutierrez, Maria-Cristina, Leclerc, Claude, Bentley, Stephen D, Stinear, Timothy P, Brisse, Sylvain, Médigue, Claudine, Parkhill, Julian, Cruveiller, Stéphane, Brosch, Roland
Published in Nature genetics (01.02.2013)
Published in Nature genetics (01.02.2013)
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Journal Article
Metagenomic shotgun sequencing of blood to identify bacteria and viruses in leukemic febrile neutropenia
Vijayvargiya, Prakhar, Feri, Adeline, Mairey, Mathilde, Rouillon, Cécile, Jeraldo, Patricio R, Esquer Garrigos, Zerelda, Thoendel, Matthew J, Greenwood-Quaintance, Kerryl E, Sohail, M Rizwan, Sampathkumar, Priya, Spychalla, Megan T, Stewart, A K, Patnaik, Mrinal M, Tande, Aaron J, Cruveiller, Stéphane, Hannet, Irene, Beurdeley, Pascale, Patel, Robin
Published in PloS one (16.06.2022)
Published in PloS one (16.06.2022)
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Journal Article
MaGe: a microbial genome annotation system supported by synteny results
Vallenet, David, Labarre, Laurent, Rouy, Zoé, Barbe, Valérie, Bocs, Stéphanie, Cruveiller, Stéphane, Lajus, Aurélie, Pascal, Géraldine, Scarpelli, Claude, Médigue, Claudine
Published in Nucleic acids research (01.01.2006)
Published in Nucleic acids research (01.01.2006)
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Journal Article
Organised genome dynamics in the Escherichia coli species results in highly diverse adaptive paths
Touchon, Marie, Hoede, Claire, Tenaillon, Olivier, Barbe, Valérie, Baeriswyl, Simon, Bidet, Philippe, Bingen, Edouard, Bonacorsi, Stéphane, Bouchier, Christiane, Bouvet, Odile, Calteau, Alexandra, Chiapello, Hélène, Clermont, Olivier, Cruveiller, Stéphane, Danchin, Antoine, Diard, Médéric, Dossat, Carole, Karoui, Meriem El, Frapy, Eric, Garry, Louis, Ghigo, Jean Marc, Gilles, Anne Marie, Johnson, James, Le Bouguénec, Chantal, Lescat, Mathilde, Mangenot, Sophie, Martinez-Jéhanne, Vanessa, Matic, Ivan, Nassif, Xavier, Oztas, Sophie, Petit, Marie Agnès, Pichon, Christophe, Rouy, Zoé, Ruf, Claude Saint, Schneider, Dominique, Tourret, Jérôme, Vacherie, Benoit, Vallenet, David, Médigue, Claudine, Rocha, Eduardo P C, Denamur, Erick
Published in PLoS genetics (01.01.2009)
Published in PLoS genetics (01.01.2009)
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Journal Article
The genomic and transcriptomic basis of the potential of Lactobacillus plantarum A6 to improve the nutritional quality of a cereal based fermented food
Turpin, Williams, Weiman, Marion, Guyot, Jean-Pierre, Lajus, Aurélie, Cruveiller, Stéphane, Humblot, Christèle
Published in International journal of food microbiology (02.02.2018)
Published in International journal of food microbiology (02.02.2018)
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Journal Article
Legumes Symbioses: Absence of Nod Genes in Photosynthetic Bradyrhizobia
Giraud, Eric, Moulin, Lionel, Vallenet, David, Barbe, Valérie, Cytryn, Eddie, Avarre, Jean-Christophe, Jaubert, Marianne, Simon, Damien, Cartieaux, Fabienne, Prin, Yves, Bena, Gilles, Hannibal, Laure, Fardoux, Joel, Kojadinovic, Mila, Vuillet, Laurie, Lajus, Aurélie, Cruveiller, Stéphane, Rouy, Zoe, Mangenot, Sophie, Segurens, Béatrice, Dossat, Carole, Franck, William L, Chang, Woo-Suk, Saunders, Elizabeth, Bruce, David, Richardson, Paul, Normand, Philippe, Dreyfus, Bernard, Pignol, David, Stacey, Gary, Emerich, David, Verméglio, André, Médigue, Claudine, Sadowsky, Michael
Published in Science (American Association for the Advancement of Science) (01.06.2007)
Published in Science (American Association for the Advancement of Science) (01.06.2007)
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Journal Article
Conservation and diversity of the IrrE/DdrO‐controlled radiation response in radiation‐resistant Deinococcus bacteria
Blanchard, Laurence, Guérin, Philippe, Roche, David, Cruveiller, Stéphane, Pignol, David, Vallenet, David, Armengaud, Jean, Groot, Arjan
Published in MicrobiologyOpen (Weinheim) (01.08.2017)
Published in MicrobiologyOpen (Weinheim) (01.08.2017)
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Journal Article
Synonymous Genetic Variation in Natural Isolates of Escherichia coli Does Not Predict Where Synonymous Substitutions Occur in a Long-Term Experiment
Maddamsetti, Rohan, Hatcher, Philip J, Cruveiller, Stéphane, Médigue, Claudine, Barrick, Jeffrey E, Lenski, Richard E
Published in Molecular biology and evolution (01.11.2015)
Published in Molecular biology and evolution (01.11.2015)
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Journal Article
Unique features revealed by the genome sequence of Acinetobacter sp. ADP1, a versatile and naturally transformation competent bacterium
Barbe, Valérie, Vallenet, David, Fonknechten, Nuria, Kreimeyer, Annett, Oztas, Sophie, Labarre, Laurent, Cruveiller, Stéphane, Robert, Catherine, Duprat, Simone, Wincker, Patrick, Ornston, L. Nicholas, Weissenbach, Jean, Marlière, Philippe, Cohen, Georges N., Médigue, Claudine
Published in Nucleic acids research (01.01.2004)
Published in Nucleic acids research (01.01.2004)
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Journal Article
Correction: PPanGGOLiN: Depicting microbial diversity via a partitioned pangenome graph
Gautreau, Guillaume, Bazin, Adelme, Gachet, Mathieu, Planel, Rémi, Burlot, Laura, Dubois, Mathieu, Perrin, Amandine, Médigue, Claudine, Calteau, Alexandra, Cruveiller, Stéphane, Matias, Catherine, Ambroise, Christophe, Rocha, Eduardo P C, Vallenet, David
Published in PLoS computational biology (10.12.2021)
Published in PLoS computational biology (10.12.2021)
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Journal Article
RNA Sequencing and Proteogenomics Reveal the Importance of Leaderless mRNAs in the Radiation-Tolerant Bacterium Deinococcus deserti
de Groot, Arjan, Roche, David, Fernandez, Bernard, Ludanyi, Monika, Cruveiller, Stéphane, Pignol, David, Vallenet, David, Armengaud, Jean, Blanchard, Laurence
Published in Genome biology and evolution (01.04.2014)
Published in Genome biology and evolution (01.04.2014)
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Journal Article
Methylobacterium genome sequences: a reference blueprint to investigate microbial metabolism of C1 compounds from natural and industrial sources
Vuilleumier, Stéphane, Chistoserdova, Ludmila, Lee, Ming-Chun, Bringel, Françoise, Lajus, Aurélie, Zhou, Yang, Gourion, Benjamin, Barbe, Valérie, Chang, Jean, Cruveiller, Stéphane, Dossat, Carole, Gillett, Will, Gruffaz, Christelle, Haugen, Eric, Hourcade, Edith, Levy, Ruth, Mangenot, Sophie, Muller, Emilie, Nadalig, Thierry, Pagni, Marco, Penny, Christian, Peyraud, Rémi, Robinson, David G, Roche, David, Rouy, Zoé, Saenampechek, Channakhone, Salvignol, Grégory, Vallenet, David, Wu, Zaining, Marx, Christopher J, Vorholt, Julia A, Olson, Maynard V, Kaul, Rajinder, Weissenbach, Jean, Médigue, Claudine, Lidstrom, Mary E
Published in PloS one (18.05.2009)
Published in PloS one (18.05.2009)
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Journal Article
Adventitious Virus Detection in Cells by High-Throughput Sequencing of Newly Synthesized RNAs: Unambiguous Differentiation of Cell Infection from Carryover of Viral Nucleic Acids
Cheval, Justine, Muth, Erika, Gonzalez, Gaëlle, Coulpier, Muriel, Beurdeley, Pascale, Cruveiller, Stéphane, Eloit, Marc
Published in mSphere (05.06.2019)
Published in mSphere (05.06.2019)
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Journal Article
Genome characteristics of facultatively symbiotic Frankia sp. strains reflect host range and host plant biogeography
Normand, Philippe, Lapierre, Pascal, Tisa, Louis S, Gogarten, Johann Peter, Alloisio, Nicole, Bagnarol, Emilie, Bassi, Carla A, Berry, Alison M, Bickhart, Derek M, Choisne, Nathalie, Couloux, Arnaud, Cournoyer, Benoit, Cruveiller, Stephane, Daubin, Vincent, Demange, Nadia, Francino, Maria Pilar, Goltsman, Eugene, Huang, Ying, Kopp, Olga R, Labarre, Laurent, Lapidus, Alla, Lavire, Celine, Marechal, Joelle, Martinez, Michele, Mastronunzio, Juliana E, Mullin, Beth C, Niemann, James, Pujic, Pierre, Rawnsley, Tania, Rouy, Zoe, Schenowitz, Chantal, Sellstedt, Anita, Tavares, Fernando, Tomkins, Jeffrey P, Vallenet, David, Valverde, Claudio, Wall, Luis G, Wang, Ying, Medigue, Claudine, Benson, David R
Published in Genome Research (01.01.2007)
Published in Genome Research (01.01.2007)
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Journal Article
Complete Nucleotide Sequence of Plasmid pTN48, Encoding the CTX-M-14 Extended-Spectrum β-Lactamase from an Escherichia coli O102-ST405 Strain
BILLARD-POMARES, Typhaine, TENAILLON, Olivier, LE NAGARD, Herve, ROUY, Zoé, CRUVEILLER, Stephane, MEDIGUE, Claudine, ARLET, Guillaume, DENAMUR, Erick, BRANGER, Catherine
Published in Antimicrobial Agents and Chemotherapy (01.03.2011)
Published in Antimicrobial Agents and Chemotherapy (01.03.2011)
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