inStrain profiles population microdiversity from metagenomic data and sensitively detects shared microbial strains
Olm, Matthew R., Crits-Christoph, Alexander, Bouma-Gregson, Keith, Firek, Brian A., Morowitz, Michael J., Banfield, Jillian F.
Published in Nature biotechnology (01.06.2021)
Published in Nature biotechnology (01.06.2021)
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Journal Article
Soils and sediments host Thermoplasmata archaea encoding novel copper membrane monooxygenases (CuMMOs)
Diamond, Spencer, Lavy, Adi, Crits-Christoph, Alexander, Matheus Carnevali, Paula B., Sharrar, Allison, Williams, Kenneth H., Banfield, Jillian F.
Published in The ISME Journal (01.05.2022)
Published in The ISME Journal (01.05.2022)
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Journal Article
Priority effects in microbiome assembly
Debray, Reena, Herbert, Robin A., Jaffe, Alexander L., Crits-Christoph, Alexander, Power, Mary E., Koskella, Britt
Published in Nature reviews. Microbiology (01.02.2022)
Published in Nature reviews. Microbiology (01.02.2022)
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Journal Article
Good microbes, bad genes? The dissemination of antimicrobial resistance in the human microbiome
Crits-Christoph, Alexander, Hallowell, Haley Anne, Koutouvalis, Kalia, Suez, Jotham
Published in Gut microbes (31.12.2022)
Published in Gut microbes (31.12.2022)
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Journal Article
The origins of SARS-CoV-2: A critical review
Holmes, Edward C., Goldstein, Stephen A., Rasmussen, Angela L., Robertson, David L., Crits-Christoph, Alexander, Wertheim, Joel O., Anthony, Simon J., Barclay, Wendy S., Boni, Maciej F., Doherty, Peter C., Farrar, Jeremy, Geoghegan, Jemma L., Jiang, Xiaowei, Leibowitz, Julian L., Neil, Stuart J.D., Skern, Tim, Weiss, Susan R., Worobey, Michael, Andersen, Kristian G., Garry, Robert F., Rambaut, Andrew
Published in Cell (16.09.2021)
Published in Cell (16.09.2021)
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Journal Article
Genome Sequencing of Sewage Detects Regionally Prevalent SARS-CoV-2 Variants
Crits-Christoph, Alexander, Kantor, Rose S, Olm, Matthew R, Whitney, Oscar N, Al-Shayeb, Basem, Lou, Yue Clare, Flamholz, Avi, Kennedy, Lauren C, Greenwald, Hannah, Hinkle, Adrian, Hetzel, Jonathan, Spitzer, Sara, Koble, Jeffery, Tan, Asako, Hyde, Fred, Schroth, Gary, Kuersten, Scott, Banfield, Jillian F, Nelson, Kara L
Published in mBio (19.01.2021)
Published in mBio (19.01.2021)
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Journal Article
The molecular epidemiology of multiple zoonotic origins of SARS-CoV-2
Pekar, Jonathan E, Magee, Andrew, Parker, Edyth, Moshiri, Niema, Izhikevich, Katherine, Havens, Jennifer L, Gangavarapu, Karthik, Malpica Serrano, Lorena Mariana, Crits-Christoph, Alexander, Matteson, Nathaniel L, Zeller, Mark, Levy, Joshua I, Wang, Jade C, Hughes, Scott, Lee, Jungmin, Park, Heedo, Park, Man-Seong, Ching Zi Yan, Katherine, Lin, Raymond Tzer Pin, Mat Isa, Mohd Noor, Noor, Yusuf Muhammad, Vasylyeva, Tetyana I, Garry, Robert F, Holmes, Edward C, Rambaut, Andrew, Suchard, Marc A, Andersen, Kristian G, Worobey, Michael, Wertheim, Joel O
Published in Science (American Association for the Advancement of Science) (26.08.2022)
Published in Science (American Association for the Advancement of Science) (26.08.2022)
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Journal Article
Sewage, Salt, Silica, and SARS-CoV‑2 (4S): An Economical Kit-Free Method for Direct Capture of SARS-CoV‑2 RNA from Wastewater
Whitney, Oscar N, Kennedy, Lauren C, Fan, Vinson B, Hinkle, Adrian, Kantor, Rose, Greenwald, Hannah, Crits-Christoph, Alexander, Al-Shayeb, Basem, Chaplin, Mira, Maurer, Anna C, Tjian, Robert, Nelson, Kara L
Published in Environmental science & technology (20.04.2021)
Published in Environmental science & technology (20.04.2021)
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Journal Article
Functional interactions of archaea, bacteria and viruses in a hypersaline endolithic community
Crits-Christoph, Alexander, Gelsinger, Diego R., Ma, Bing, Wierzchos, Jacek, Ravel, Jacques, Davila, Alfonso, Casero, M. Cristina, DiRuggiero, Jocelyne
Published in Environmental microbiology (01.06.2016)
Published in Environmental microbiology (01.06.2016)
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Journal Article
Species- and site-specific genome editing in complex bacterial communities
Rubin, Benjamin E., Diamond, Spencer, Cress, Brady F., Crits-Christoph, Alexander, Lou, Yue Clare, Borges, Adair L., Shivram, Haridha, He, Christine, Xu, Michael, Zhou, Zeyi, Smith, Sara J., Rovinsky, Rachel, Smock, Dylan C. J., Tang, Kimberly, Owens, Trenton K., Krishnappa, Netravathi, Sachdeva, Rohan, Barrangou, Rodolphe, Deutschbauer, Adam M., Banfield, Jillian F., Doudna, Jennifer A.
Published in Nature microbiology (01.01.2022)
Published in Nature microbiology (01.01.2022)
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Journal Article
Necrotizing enterocolitis is preceded by increased gut bacterial replication, Klebsiella , and fimbriae-encoding bacteria
Olm, Matthew R, Bhattacharya, Nicholas, Crits-Christoph, Alexander, Firek, Brian A, Baker, Robyn, Song, Yun S, Morowitz, Michael J, Banfield, Jillian F
Published in Science advances (11.12.2019)
Published in Science advances (11.12.2019)
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Journal Article
Microbial diversity and the presence of algae in halite endolithic communities are correlated to atmospheric moisture in the hyper-arid zone of the Atacama Desert
Robinson, Courtney K., Wierzchos, Jacek, Black, Celeste, Crits-Christoph, Alexander, Ma, Bing, Ravel, Jacques, Ascaso, Carmen, Artieda, Octavio, Valea, Sergio, Roldán, Mònica, Gómez-Silva, Benito, DiRuggiero, Jocelyne
Published in Environmental microbiology (01.02.2015)
Published in Environmental microbiology (01.02.2015)
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Journal Article
Author Correction: Priority effects in microbiome assembly
Debray, Reena, Herbert, Robin A., Jaffe, Alexander L., Crits-Christoph, Alexander, Power, Mary E., Koskella, Britt
Published in Nature reviews. Microbiology (01.02.2022)
Published in Nature reviews. Microbiology (01.02.2022)
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Journal Article
Asgard archaea modulate potential methanogenesis substrates in wetland soil
Valentin-Alvarado, Luis E., Appler, Kathryn E., De Anda, Valerie, Schoelmerich, Marie C., West-Roberts, Jacob, Kivenson, Veronika, Crits-Christoph, Alexander, Ly, Lynn, Sachdeva, Rohan, Greening, Chris, Savage, David F., Baker, Brett J., Banfield, Jillian F.
Published in Nature communications (31.07.2024)
Published in Nature communications (31.07.2024)
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Journal Article
Ten Simple Rules for Developing Public Biological Databases
Helmy, Mohamed, Crits-Christoph, Alexander, Bader, Gary D
Published in PLoS computational biology (01.11.2016)
Published in PLoS computational biology (01.11.2016)
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Journal Article