Pulmonary Metagenomic Sequencing Suggests Missed Infections in Immunocompromised Children
Zinter, Matt S, Dvorak, Christopher C, Mayday, Madeline Y, Iwanaga, Kensho, Ly, Ngoc P, McGarry, Meghan E, Church, Gwynne D, Faricy, Lauren E, Rowan, Courtney M, Hume, Janet R, Steiner, Marie E, Crawford, Emily D, Langelier, Charles, Kalantar, Katrina, Chow, Eric D, Miller, Steve, Shimano, Kristen, Melton, Alexis, Yanik, Gregory A, Sapru, Anil, DeRisi, Joseph L
Published in Clinical Infectious Diseases (17.05.2019)
Published in Clinical Infectious Diseases (17.05.2019)
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Metronidazole treatment rapidly reduces genital inflammation through effects on bacterial vaginosis-associated bacteria rather than lactobacilli
Armstrong, Eric, Hemmerling, Anke, Miller, Steve, Burke, Kerianne E, Newmann, Sara J, Morris, Sheldon R, Reno, Hilary, Huibner, Sanja, Kulikova, Maria, Liu, Rachel, Crawford, Emily D, Castañeda, Gloria R, Nagelkerke, Nico, Coburn, Bryan, Cohen, Craig R, Kaul, Rupert
Published in The Journal of clinical investigation (15.03.2022)
Published in The Journal of clinical investigation (15.03.2022)
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Illuminating uveitis: metagenomic deep sequencing identifies common and rare pathogens
Doan, Thuy, Wilson, Michael R, Crawford, Emily D, Chow, Eric D, Khan, Lillian M, Knopp, Kristeene A, O'Donovan, Brian D, Xia, Dongxiang, Hacker, Jill K, Stewart, Jay M, Gonzales, John A, Acharya, Nisha R, DeRisi, Joseph L
Published in Genome medicine (25.08.2016)
Published in Genome medicine (25.08.2016)
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The Connectivity Map: Using Gene-Expression Signatures to Connect Small Molecules, Genes, and Disease
Lamb, Justin, Crawford, Emily D., Peck, David, Modell, Joshua W., Blat, Irene C., Wrobel, Matthew J., Lerner, Jim, Brunet, Jean-Philippe, Subramanian, Aravind, Ross, Kenneth N., Reich, Michael, Hieronymus, Haley, Wei, Guo, Armstrong, Scott A., Haggarty, Stephen J., Clemons, Paul A., Wei, Ru, Carr, Steven A., Lander, Eric S., Golub, Todd R.
Published in Science (American Association for the Advancement of Science) (29.09.2006)
Published in Science (American Association for the Advancement of Science) (29.09.2006)
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Plasmid-free CRISPR/Cas9 genome editing in Plasmodium falciparum confirms mutations conferring resistance to the dihydroisoquinolone clinical candidate SJ733
Crawford, Emily D, Quan, Jenai, Horst, Jeremy A, Ebert, Daniel, Wu, Wesley, DeRisi, Joseph L
Published in PloS one (22.05.2017)
Published in PloS one (22.05.2017)
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Unbiased Metagenomic Sequencing for Pediatric Meningitis in Bangladesh Reveals Neuroinvasive Chikungunya Virus Outbreak and Other Unrealized Pathogens
Saha, Senjuti, Ramesh, Akshaya, Kalantar, Katrina, Malaker, Roly, Hasanuzzaman, Md, Khan, Lillian M, Mayday, Madeline Y, Sajib, M S I, Li, Lucy M, Langelier, Charles, Rahman, Hafizur, Crawford, Emily D, Tato, Cristina M, Islam, Maksuda, Juan, Yun-Fang, de Bourcy, Charles, Dimitrov, Boris, Wang, James, Tang, Jennifer, Sheu, Jonathan, Egger, Rebecca, De Carvalho, Tiago Rodrigues, Wilson, Michael R, Saha, Samir K, DeRisi, Joseph L
Published in mBio (17.12.2019)
Published in mBio (17.12.2019)
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Reduced Insulin/IGF-1 Signaling Restores the Dynamic Properties of Key Stress Granule Proteins during Aging
Lechler, Marie C., Crawford, Emily D., Groh, Nicole, Widmaier, Katja, Jung, Raimund, Kirstein, Janine, Trinidad, Jonathan C., Burlingame, Alma L., David, Della C.
Published in Cell reports (Cambridge) (10.01.2017)
Published in Cell reports (Cambridge) (10.01.2017)
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Toward the Development of Peptide Nanofilaments and Nanoropes as Smart Materials
Wagner, Daniel E., Phillips, Charles L., Ali, Wasif M., Nybakken, Grant E., Crawford, Emily D., Schwab, Alexander D., Smith, Walter F., Fairman, Robert, DeGrado, William F.
Published in Proceedings of the National Academy of Sciences - PNAS (06.09.2005)
Published in Proceedings of the National Academy of Sciences - PNAS (06.09.2005)
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A method for high-throughput gene expression signature analysis
Peck, David, Crawford, Emily D, Ross, Kenneth N, Stegmaier, Kimberly, Golub, Todd R, Lamb, Justin
Published in Genome biology (01.01.2006)
Published in Genome biology (01.01.2006)
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Amplification-free detection of SARS-CoV-2 with CRISPR-Cas13a and mobile phone microscopy
Fozouni, Parinaz, Son, Sungmin, Díaz de León Derby, María, Knott, Gavin J., Gray, Carley N., D’Ambrosio, Michael V., Zhao, Chunyu, Switz, Neil A., Kumar, G. Renuka, Stephens, Stephanie I., Boehm, Daniela, Tsou, Chia-Lin, Shu, Jeffrey, Bhuiya, Abdul, Armstrong, Maxim, Harris, Andrew R., Chen, Pei-Yi, Osterloh, Jeannette M., Meyer-Franke, Anke, Joehnk, Bastian, Walcott, Keith, Sil, Anita, Langelier, Charles, Pollard, Katherine S., Crawford, Emily D., Puschnik, Andreas S., Phelps, Maira, Kistler, Amy, DeRisi, Joseph L., Doudna, Jennifer A., Fletcher, Daniel A., Ott, Melanie
Published in Cell (21.01.2021)
Published in Cell (21.01.2021)
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Integrating host response and unbiased microbe detection for lower respiratory tract infection diagnosis in critically ill adults
Langelier, Charles, Kalantar, Katrina L., Moazed, Farzad, Wilson, Michael R., Crawford, Emily D., Deiss, Thomas, Belzer, Annika, Bolourchi, Samaneh, Caldera, Saharai, Fung, Monica, Jauregui, Alejandra, Malcolm, Katherine, Lyden, Amy, Khan, Lillian, Vessel, Kathryn, Quan, Jenai, Zinter, Matt, Chiu, Charles Y., Chow, Eric D., Wilson, Jenny, Miller, Steve, Matthay, Michael A., Pollard, Katherine S., Christenson, Stephanie, Calfee, Carolyn S., DeRisi, Joseph L.
Published in Proceedings of the National Academy of Sciences - PNAS (26.12.2018)
Published in Proceedings of the National Academy of Sciences - PNAS (26.12.2018)
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FLASH: a next-generation CRISPR diagnostic for multiplexed detection of antimicrobial resistance sequences
Quan, Jenai, Langelier, Charles, Kuchta, Alison, Batson, Joshua, Teyssier, Noam, Lyden, Amy, Caldera, Saharai, McGeever, Aaron, Dimitrov, Boris, King, Ryan, Wilheim, Jordan, Murphy, Maxwell, Ares, Lara Pesce, Travisano, Katherine A, Sit, Rene, Amato, Roberto, Mumbengegwi, Davis R, Smith, Jennifer L, Bennett, Adam, Gosling, Roly, Mourani, Peter M, Calfee, Carolyn S, Neff, Norma F, Chow, Eric D, Kim, Peter S, Greenhouse, Bryan, DeRisi, Joseph L, Crawford, Emily D
Published in Nucleic acids research (22.08.2019)
Published in Nucleic acids research (22.08.2019)
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Erratum to: Illuminating uveitis: metagenomic deep sequencing identifies common and rare pathogens
Doan, Thuy, Wilson, Michael R, Crawford, Emily D, Chow, Eric D, Khan, Lillian M, Knopp, Kristeene A, O'Donovan, Brian D, Xia, Dongxiang, Hacker, Jill K, Stewart, Jay M, Gonzales, John A, Acharya, Nisha R, DeRisi, Joseph L
Published in Genome medicine (22.11.2016)
Published in Genome medicine (22.11.2016)
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Design of a heterotetrameric coiled coil
Root, Benjamin C., Pellegrino, Laurel D., Crawford, Emily D., Kokona, Bashkim, Fairman, Robert
Published in Protein science (01.02.2009)
Published in Protein science (01.02.2009)
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Identification of a Polymorphism in the N Gene of SARS-CoV-2 That Adversely Impacts Detection by Reverse Transcription-PCR
Vanaerschot, Manu, Mann, Sabrina A, Webber, James T, Kamm, Jack, Bell, Sidney M, Bell, John, Hong, Si Noon, Nguyen, Minh Phuong, Chan, Lienna Y, Bhatt, Karan D, Tan, Michelle, Detweiler, Angela M, Espinosa, Alex, Wu, Wesley, Batson, Joshua, Dynerman, David, Wadford, Debra A, Puschnik, Andreas S, Neff, Norma, Ahyong, Vida, Miller, Steve, Ayscue, Patrick, Tato, Cristina M, Paul, Simon, Kistler, Amy L, DeRisi, Joseph L, Crawford, Emily D
Published in Journal of clinical microbiology (17.12.2020)
Published in Journal of clinical microbiology (17.12.2020)
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Genomic profiling of breast secretory carcinomas reveals distinct genetics from other breast cancers and similarity to mammary analog secretory carcinomas
Krings, Gregor, Joseph, Nancy M, Bean, Gregory R, Solomon, David, Onodera, Courtney, Talevich, Eric, Yeh, Iwei, Grenert, James P, Hosfield, Elizabeth, Crawford, Emily D, Jordan, Richard C, van Zante, Annemieke, Zaloudek, Charles, Shin, Sandra J, Chen, Yunn-Yi
Published in Modern pathology (01.08.2017)
Published in Modern pathology (01.08.2017)
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FLASH-TB: an Application of Next-Generation CRISPR to Detect Drug Resistant Tuberculosis from Direct Sputum
Tram, Trinh Thi Bich, Ha, Vu Thi Ngoc, Trieu, Le Pham Tien, Ashton, Philip M, Crawford, Emily D, Thu, Do Dang Anh, Quang, Nguyen Le, Thwaites, Guy E, Walker, Timothy M, Anscombe, Catherine, Thuong, Nguyen Thuy Thuong
Published in Journal of clinical microbiology (20.04.2023)
Published in Journal of clinical microbiology (20.04.2023)
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Detection of Cryptococcus DNA by Metagenomic Next-generation Sequencing in Symptomatic Cryptococcal Antigenemia
Ramachandran, Prashanth S, Cresswell, Fiona V, Meya, David B, Langelier, Charles, Crawford, Emily D, DeRisi, Joseph L, Boulware, David R, Wilson, Michael R
Published in Clinical infectious diseases (17.05.2019)
Published in Clinical infectious diseases (17.05.2019)
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A compact Cascade-Cas3 system for targeted genome engineering
Csörgő, Bálint, León, Lina M, Chau-Ly, Ilea J, Vasquez-Rifo, Alejandro, Berry, Joel D, Mahendra, Caroline, Crawford, Emily D, Lewis, Jennifer D, Bondy-Denomy, Joseph
Published in Nature methods (01.12.2020)
Published in Nature methods (01.12.2020)
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