Search Results - "Cram, Jacob A." :: K.UTB vyhledávací portál | TBU Library Retrieval Portal

Correlation detection strategies in microbial data sets vary widely in sensitivity and precision

Correlation detection strategies in microbial data sets vary widely in sensitivity and precision

by Weiss, Sophie, Van Treuren, Will, Lozupone, Catherine, Faust, Karoline, Friedman, Jonathan, Deng, Ye, Xia, Li Charlie, Xu, Zhenjiang Zech, Ursell, Luke, Alm, Eric J, Birmingham, Amanda, Cram, Jacob A, Fuhrman, Jed A, Raes, Jeroen, Sun, Fengzhu, Zhou, Jizhong, Knight, Rob
Published in The ISME Journal (01.07.2016)

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Deep ocean nutrients imply large latitudinal variation in particle transfer efficiency

Deep ocean nutrients imply large latitudinal variation in particle transfer efficiency

by Weber, Thomas, Cram, Jacob A., Leung, Shirley W., DeVries, Timothy, Deutsch, Curtis
Published in Proceedings of the National Academy of Sciences - PNAS (02.08.2016)

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Seasonal and interannual variability of the marine bacterioplankton community throughout the water column over ten years

Seasonal and interannual variability of the marine bacterioplankton community throughout the water column over ten years

by Cram, Jacob A, Chow, Cheryl-Emiliane T, Sachdeva, Rohan, Needham, David M, Parada, Alma E, Steele, Joshua A, Fuhrman, Jed A
Published in The ISME Journal (01.03.2015)

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Dynamics and interactions of highly resolved marine plankton via automated high-frequency sampling

Dynamics and interactions of highly resolved marine plankton via automated high-frequency sampling

by Needham, David M, Fichot, Erin B, Wang, Ellice, Berdjeb, Lyria, Cram, Jacob A, Fichot, Cédric G, Fuhrman, Jed A
Published in The ISME Journal (01.10.2018)

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Temporal variability and coherence of euphotic zone bacterial communities over a decade in the Southern California Bight

Temporal variability and coherence of euphotic zone bacterial communities over a decade in the Southern California Bight

by Chow, Cheryl-Emiliane T, Sachdeva, Rohan, Cram, Jacob A, Steele, Joshua A, Needham, David M, Patel, Anand, Parada, Alma E, Fuhrman, Jed A
Published in The ISME Journal (01.12.2013)

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Short-term observations of marine bacterial and viral communities: patterns, connections and resilience

Short-term observations of marine bacterial and viral communities: patterns, connections and resilience

by Needham, David M, Chow, Cheryl-Emiliane T, Cram, Jacob A, Sachdeva, Rohan, Parada, Alma, Fuhrman, Jed A
Published in The ISME Journal (01.07.2013)

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Journal Article

Accurate genome relative abundance estimation based on shotgun metagenomic reads

Accurate genome relative abundance estimation based on shotgun metagenomic reads

by Xia, Li C, Cram, Jacob A, Chen, Ting, Fuhrman, Jed A, Sun, Fengzhu
Published in PloS one (06.12.2011)

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Human gut microbiota is associated with HIV-reactive immunoglobulin at baseline and following HIV vaccination

Human gut microbiota is associated with HIV-reactive immunoglobulin at baseline and following HIV vaccination

by Cram, Jacob A, Fiore-Gartland, Andrew J, Srinivasan, Sujatha, Karuna, Shelly, Pantaleo, Giuseppe, Tomaras, Georgia D, Fredricks, David N, Kublin, James G
Published in PloS one (23.12.2019)

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Explore mediated co-varying dynamics in microbial community using integrated local similarity and liquid association analysis

Explore mediated co-varying dynamics in microbial community using integrated local similarity and liquid association analysis

by Ai, Dongmei, Li, Xiaoxin, Pan, Hongfei, Chen, Jiamin, Cram, Jacob A, Xia, Li C
Published in BMC genomics (04.04.2019)

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Associations between picocyanobacterial ecotypes and cyanophage host genes across ocean basins and depth

Associations between picocyanobacterial ecotypes and cyanophage host genes across ocean basins and depth

by Fuchsman, Clara A, Garcia Prieto, David, Hays, Matthew D, Cram, Jacob A
Published in PeerJ (San Francisco, CA) (28.02.2023)

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Quantifying the linkages between California sea lion (Zalophus californianus) strandings and particulate domoic acid concentrations at piers across Southern California

Quantifying the linkages between California sea lion (Zalophus californianus) strandings and particulate domoic acid concentrations at piers across Southern California

by Smith, Jayme, Cram, Jacob A., Berndt, Malena P., Hoard, Vanessa, Shultz, Dana, Deming, Alissa C.
Published in Frontiers in Marine Science (01.12.2023)

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Microbiota of Crassostrea virginica larvae during a hatchery crash and under normal production: Amplicon sequence data

Microbiota of Crassostrea virginica larvae during a hatchery crash and under normal production: Amplicon sequence data

by Cram, Jacob A., Gray, Matthew W., McFarland, Katherine, Hollins, Ashley
Published in Data in brief (01.02.2022)

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Marine microbial community dynamics and their ecological interpretation

Marine microbial community dynamics and their ecological interpretation

by Fuhrman, Jed A, Cram, Jacob A, Needham, David M
Published in Nature reviews. Microbiology (01.03.2015)

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Cross-depth analysis of marine bacterial networks suggests downward propagation of temporal changes

Cross-depth analysis of marine bacterial networks suggests downward propagation of temporal changes

by Cram, Jacob A, Xia, Li C, Needham, David M, Sachdeva, Rohan, Sun, Fengzhu, Fuhrman, Jed A
Published in The ISME Journal (01.12.2015)

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New insights into relationships between active and dormant organisms, phylogenetic diversity and ecosystem productivity

New insights into relationships between active and dormant organisms, phylogenetic diversity and ecosystem productivity

by Cram, Jacob A
Published in Molecular ecology (01.12.2015)

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Dilution reveals how viral lysis and grazing shape microbial communities

Dilution reveals how viral lysis and grazing shape microbial communities

by Cram, Jacob A., Parada, Alma E., Fuhrman, Jed A.
Published in Limnology and oceanography (01.05.2016)

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Microbial diversity and abundance vary along salinity, oxygen, and particle size gradients in the Chesapeake Bay

Microbial diversity and abundance vary along salinity, oxygen, and particle size gradients in the Chesapeake Bay

by Cram, Jacob A., Hollins, Ashley, McCarty, Alexandra J., Martinez, Grace, Cui, Minming, Gomes, Maya L., Fuchsman, Clara A.
Published in Environmental microbiology (01.01.2024)

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Variable particle size distributions reduce the sensitivity of global export flux to climate change

Variable particle size distributions reduce the sensitivity of global export flux to climate change

by Leung, Shirley W, Weber, Thomas, Cram, Jacob A, Deutsch, Curtis
Published in Biogeosciences (14.01.2021)

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Niche differentiation in microorganisms capable of using alternative reduced nitrogen sources studied across depth and between oxic and anoxic ocean regions

Niche differentiation in microorganisms capable of using alternative reduced nitrogen sources studied across depth and between oxic and anoxic ocean regions

by Huanca-Valenzuela, Paulina, Cram, Jacob A., Fuchsman, Clara A.
Published in Frontiers in Marine Science (16.07.2024)

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Extended local similarity analysis (eLSA) of microbial community and other time series data with replicates

Extended local similarity analysis (eLSA) of microbial community and other time series data with replicates

by Xia, Li C, Steele, Joshua A, Cram, Jacob A, Cardon, Zoe G, Simmons, Sheri L, Vallino, Joseph J, Fuhrman, Jed A, Sun, Fengzhu
Published in BMC systems biology (14.12.2011)

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