Long Noncoding RNA Modulates Alternative Splicing Regulators in Arabidopsis
Bardou, Florian, Ariel, Federico, Simpson, Craig G., Romero-Barrios, Natali, Laporte, Philippe, Balzergue, Sandrine, Brown, John W.S., Crespi, Martin
Published in Developmental cell (28.07.2014)
Published in Developmental cell (28.07.2014)
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Journal Article
Alternative splicing and nonsense-mediated decay modulate expression of important regulatory genes in Arabidopsis
Kalyna, Maria, Simpson, Craig G, Syed, Naeem H, Lewandowska, Dominika, Marquez, Yamile, Kusenda, Branislav, Marshall, Jacqueline, Fuller, John, Cardle, Linda, McNicol, Jim, Dinh, Huy Q, Barta, Andrea, Brown, John W S
Published in Nucleic acids research (01.03.2012)
Published in Nucleic acids research (01.03.2012)
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Journal Article
Nonsense-Mediated RNA Decay Factor UPF1 Is Critical for Posttranscriptional and Translational Gene Regulation in Arabidopsis
Raxwal, Vivek K., Simpson, Craig G., Gloggnitzer, Jiradet, Entinze, Juan Carlos, Guo, Wenbin, Zhang, Runxuan, Brown, John W.S., Riha, Karel
Published in The Plant cell (01.09.2020)
Published in The Plant cell (01.09.2020)
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Journal Article
Physiological, biochemical and molecular responses of the potato (Solanum tuberosum L.) plant to moderately elevated temperature
HANCOCK, ROBERT D., MORRIS, WAYNE L., DUCREUX, LAURENCE J. M., MORRIS, JENNY A., USMAN, MUHAMMAD, VERRALL, SUSAN R., FULLER, JOHN, SIMPSON, CRAIG G., ZHANG, RUNXUAN, HEDLEY, PETE E., TAYLOR, MARK A.
Published in Plant, cell and environment (01.02.2014)
Published in Plant, cell and environment (01.02.2014)
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Journal Article
The Arabidopsis SR45 Splicing Factor, a Negative Regulator of Sugar Signaling, Modulates SNF1-Related Protein Kinase 1 Stability
Carvalho, Raquel F., Szakonyi, Dóra, Simpson, Craig G., Barbosa, Inês C.R., Brown, John W.S., Baena-González, Elena, Duque, Paula
Published in The Plant cell (01.08.2016)
Published in The Plant cell (01.08.2016)
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Journal Article
The cap-binding complex modulates ABA-responsive transcript splicing during germination in barley (Hordeum vulgare)
Sybilska, Ewa, Collin, Anna, Sadat Haddadi, Bahareh, Mur, Luis A. J., Beckmann, Manfred, Guo, Wenbin, Simpson, Craig G., Daszkowska-Golec, Agata
Published in Scientific reports (07.08.2024)
Published in Scientific reports (07.08.2024)
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Journal Article
spliceosome assembly factor GEMIN2 attenuates the effects of temperature on alternative splicing and circadian rhythms
Schlaen, RubeÌn Gustavo, EstefaneÌiÌa Mancini, Sabrina Elena Sanchez, Soledad Perez-SanteÌiÌaÌngelo, MateÌiÌaÌiÌas L. Rugnone, Craig G. Simpson, John W. S. Brown, Xu Zhang, Ariel Chernomoretz, Marcelo J. Yanovsky
Published in Proceedings of the National Academy of Sciences - PNAS (28.07.2015)
Published in Proceedings of the National Academy of Sciences - PNAS (28.07.2015)
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Journal Article
BaRTv1.0: an improved barley reference transcript dataset to determine accurate changes in the barley transcriptome using RNA-seq
Rapazote-Flores, Paulo, Bayer, Micha, Milne, Linda, Mayer, Claus-Dieter, Fuller, John, Guo, Wenbin, Hedley, Pete E, Morris, Jenny, Halpin, Claire, Kam, Jason, McKim, Sarah M, Zwirek, Monika, Casao, M Cristina, Barakate, Abdellah, Schreiber, Miriam, Stephen, Gordon, Zhang, Runxuan, Brown, John W S, Waugh, Robbie, Simpson, Craig G
Published in BMC genomics (11.12.2019)
Published in BMC genomics (11.12.2019)
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Journal Article
Mutation of Arabidopsis SPLICEOSOMAL TIMEKEEPER LOCUS1 Causes Circadian Clock Defects
Jones, Matthew A., Williams, Brian A., McNicol, Jim, Simpson, Craig G., Brown, John W.S., Harmer, Stacey L.
Published in The Plant cell (01.10.2012)
Published in The Plant cell (01.10.2012)
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Journal Article
A methyl transferase links the circadian clock to the regulation of alternative splicing
Yanovsky, Marcelo J, Sanchez, Sabrina E, Petrillo, Ezequiel, Beckwith, Esteban J, Zhang, Xu, Rugnone, Matias L, Hernando, C. Esteban, Cuevas, Juan C, Godoy Herz, Micaela A, Depetris-Chauvin, Ana, Simpson, Craig G, Brown, John W. S, Cerdán, Pablo D, Borevitz, Justin O, Mas, Paloma, Ceriani, M. Fernanda, Kornblihtt, Alberto R
Published in Nature (London) (04.11.2010)
Published in Nature (London) (04.11.2010)
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Journal Article
Alternative Splicing of Barley Clock Genes in Response to Low Temperature
Calixto, Cristiane P G, Simpson, Craig G, Waugh, Robbie, Brown, John W S
Published in PloS one (13.12.2016)
Published in PloS one (13.12.2016)
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Journal Article
Editorial: Alternative Splicing Regulation in Plants
Petrillo, Ezequiel, Kalyna, Maria, Mandadi, Kranthi K., Tu, Shih-Long, Simpson, Craig G.
Published in Frontiers in plant science (09.07.2020)
Published in Frontiers in plant science (09.07.2020)
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Journal Article
EORNA, a barley gene and transcript abundance database
Milne, Linda, Bayer, Micha, Rapazote-Flores, Paulo, Mayer, Claus-Dieter, Waugh, Robbie, Simpson, Craig G.
Published in Scientific data (25.03.2021)
Published in Scientific data (25.03.2021)
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Journal Article
How does temperature affect splicing events? Isoform switching of splicing factors regulates splicing of LATE ELONGATED HYPOCOTYL (LHY)
James, Allan B., Calixto, Cristiane P.G., Tzioutziou, Nikoleta A., Guo, Wenbin, Zhang, Runxuan, Simpson, Craig G., Jiang, Wenying, Nimmo, Gillian A., Brown, John W.S., Nimmo, Hugh G.
Published in Plant, cell and environment (01.07.2018)
Published in Plant, cell and environment (01.07.2018)
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Journal Article
Screening of NIAS World Rice Core Collection for Seeds with Long Longevity as Useful Potential Breeding Materials Focusing on the Stability of Embryonic RNAs
Saighani, Kalimullah, Kashiwagi, Megumi, Habibi, Safiullah, Simpson, Craig G, Yamada, Tetsuya, Kanekatsu, Motoki
Published in Plants (Basel) (06.07.2024)
Published in Plants (Basel) (06.07.2024)
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Journal Article
AtRTD – a comprehensive reference transcript dataset resource for accurate quantification of transcript-specific expression in Arabidopsis thaliana
Zhang, Runxuan, Calixto, Cristiane P. G., Tzioutziou, Nikoleta A., James, Allan B., Simpson, Craig G., Guo, Wenbin, Marquez, Yamile, Kalyna, Maria, Patro, Rob, Eyras, Eduardo, Barta, Andrea, Nimmo, Hugh G., Brown, John W. S.
Published in The New phytologist (01.10.2015)
Published in The New phytologist (01.10.2015)
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Journal Article
Involvement of the nuclear cap-binding protein complex in alternative splicing in Arabidopsis thaliana
Raczynska, Katarzyna Dorota, Simpson, Craig G, Ciesiolka, Adam, Szewc, Lukasz, Lewandowska, Dominika, McNicol, Jim, Szweykowska-Kulinska, Zofia, Brown, John W S, Jarmolowski, Artur
Published in Nucleic acids research (01.01.2010)
Published in Nucleic acids research (01.01.2010)
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Journal Article
Monitoring changes in alternative precursor messenger RNA splicing in multiple gene transcripts
Simpson, Craig G, Fuller, John, Maronova, Monika, Kalyna, Maria, Davidson, Diane, McNicol, Jim, Barta, Andrea, Brown, John W.S
Published in The Plant journal : for cell and molecular biology (01.03.2008)
Published in The Plant journal : for cell and molecular biology (01.03.2008)
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Journal Article
Arabidopsis PTB1 and PTB2 proteins negatively regulate splicing of a mini‐exon splicing reporter and affect alternative splicing of endogenous genes differentially
Simpson, Craig G, Lewandowska, Dominika, Liney, Michele, Davidson, Diane, Chapman, Sean, Fuller, John, McNicol, Jim, Shaw, Paul, Brown, John W. S
Published in The New phytologist (01.07.2014)
Published in The New phytologist (01.07.2014)
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Journal Article
Regulation of plant gene expression by alternative splicing
Simpson, Craig G, Manthri, Sujatha, Raczynska, Katarzyna Dorota, Kalyna, Maria, Lewandowska, Dominika, Kusenda, Branislav, Maronova, Monika, Szweykowska-Kulinska, Zofia, Jarmolowski, Artur, Barta, Andrea, Brown, John W S
Published in Biochemical Society transactions (01.04.2010)
Published in Biochemical Society transactions (01.04.2010)
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