The distribution of fitness effects of spontaneous mutations in Chlamydomonas reinhardtii inferred using frequency changes under experimental evolution
Böndel, Katharina B, Samuels, Toby, Craig, Rory J, Ness, Rob W, Colegrave, Nick, Keightley, Peter D
Published in PLoS genetics (01.06.2022)
Published in PLoS genetics (01.06.2022)
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Journal Article
A beginner's guide to manual curation of transposable elements
Goubert, Clement, Craig, Rory J, Bilat, Agustin F, Peona, Valentina, Vogan, Aaron A, Protasio, Anna V
Published in Mobile DNA (30.03.2022)
Published in Mobile DNA (30.03.2022)
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Journal Article
Widespread polycistronic gene expression in green algae
Gallaher, Sean D., Craig, Rory J., Ganesan, Iniyan, Purvine, Samuel O., McCorkle, Sean R., Grimwood, Jane, Strenkert, Daniela, Davidi, Lital, Roth, Melissa S., Jeffers, Tim L., Lipton, Mary S., Niyogi, Krishna K., Schmutz, Jeremy, Theg, Steven M., Blaby-Haas, Crysten E., Merchant, Sabeeha S.
Published in Proceedings of the National Academy of Sciences - PNAS (16.02.2021)
Published in Proceedings of the National Academy of Sciences - PNAS (16.02.2021)
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Journal Article
Correction: A beginner's guide to manual curation of transposable elements
Goubert, Clement, Craig, Rory J, Bilat, Agustin F, Peona, Valentina, Vogan, Aaron A, Protasio, Anna V
Published in Mobile DNA (04.05.2022)
Published in Mobile DNA (04.05.2022)
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Journal Article
Comparative genomics of Chlamydomonas
Craig, Rory J, Hasan, Ahmed R, Ness, Rob W, Keightley, Peter D
Published in The Plant cell (31.05.2021)
Published in The Plant cell (31.05.2021)
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Journal Article
An Ancient Clade of Penelope-Like Retroelements with Permuted Domains Is Present in the Green Lineage and Protists, and Dominates Many Invertebrate Genomes
Craig, Rory J, Yushenova, Irina A, Rodriguez, Fernando, Arkhipova, Irina R
Published in Molecular biology and evolution (01.11.2021)
Published in Molecular biology and evolution (01.11.2021)
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Journal Article
Rates and spectra of de novo structural mutations in Chlamydomonas reinhardtii
López-Cortegano, Eugenio, Craig, Rory J, Chebib, Jobran, Balogun, Eniolaye J, Keightley, Peter D
Published in Genome research (01.01.2023)
Published in Genome research (01.01.2023)
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Journal Article
The Chlamydomonas Genome Project, version 6: Reference assemblies for mating-type plus and minus strains reveal extensive structural mutation in the laboratory
Craig, Rory J, Gallaher, Sean D, Shu, Shengqiang, Salomé, Patrice A, Jenkins, Jerry W, Blaby-Haas, Crysten E, Purvine, Samuel O, O'Donnell, Samuel, Barry, Kerrie, Grimwood, Jane, Strenkert, Daniela, Kropat, Janette, Daum, Chris, Yoshinaga, Yuko, Goodstein, David M, Vallon, Olivier, Schmutz, Jeremy, Merchant, Sabeeha S
Published in The Plant cell (20.02.2023)
Published in The Plant cell (20.02.2023)
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Journal Article
Pumping iron: A multi-omics analysis of two extremophilic algae reveals iron economy management
Davidi, Lital, Gallaher, Sean D, Ben-David, Eyal, Purvine, Samuel O, Fillmore, Thomas L, Nicora, Carrie D, Craig, Rory J, Schmollinger, Stefan, Roje, Sanja, Blaby-Haas, Crysten E, Auber, Robert P, Wisecaver, Jennifer H, Merchant, Sabeeha S
Published in Proceedings of the National Academy of Sciences - PNAS (25.07.2023)
Published in Proceedings of the National Academy of Sciences - PNAS (25.07.2023)
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Journal Article
Eukaryotic RNA-guided endonucleases evolved from a unique clade of bacterial enzymes
Yoon, Peter H, Skopintsev, Petr, Shi, Honglue, Chen, LinXing, Adler, Benjamin A, Al-Shimary, Muntathar, Craig, Rory J, Loi, Kenneth J, DeTurk, Evan C, Li, Zheng, Amerasekera, Jasmine, Trinidad, Marena, Nisonoff, Hunter, Chen, Kai, Lahiri, Arushi, Boger, Ron, Jacobsen, Steve, Banfield, Jillian F, Doudna, Jennifer A
Published in Nucleic acids research (11.12.2023)
Published in Nucleic acids research (11.12.2023)
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Journal Article
De Novo Mutation Rate Variation and Its Determinants in Chlamydomonas
López-Cortegano, Eugenio, Craig, Rory J, Chebib, Jobran, Samuels, Toby, Morgan, Andrew D, Kraemer, Susanne A, Böndel, Katharina B, Ness, Rob W, Colegrave, Nick, Keightley, Peter D
Published in Molecular biology and evolution (01.09.2021)
Published in Molecular biology and evolution (01.09.2021)
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Journal Article
Patterns of population structure and complex haplotype sharing among field isolates of the green alga Chlamydomonas reinhardtii
Craig, Rory J., Böndel, Katharina B., Arakawa, Kazuharu, Nakada, Takashi, Ito, Takuro, Bell, Graham, Colegrave, Nick, Keightley, Peter D., Ness, Rob W.
Published in Molecular ecology (01.09.2019)
Published in Molecular ecology (01.09.2019)
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Journal Article
Leaky ribosomal scanning enables tunable translation of bicistronic ORFs in green algae
Duenas, Marco A, Craig, Rory J, Gallaher, Sean D, Moseley, Jeffrey L, Merchant, Sabeeha S
Published in bioRxiv (25.07.2024)
Published in bioRxiv (25.07.2024)
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Journal Article
Rates and spectra of de novo structural mutations in Chlamydomonas reinhardtii
López-Cortegano, Eugenio, Craig, Rory J, Chebib, Jobran, Balogun, Eniolaye J, Keightley, Peter D
Published in Genome research (01.01.2023)
Published in Genome research (01.01.2023)
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Journal Article
The Chlamydomonas Genome Project, version 6: Reference assemblies for mating-type plus and minus strains reveal extensive structural mutation in the laboratory
Craig, Rory J., Gallaher, Sean D., Shu, Shengqiang, Salomé, Patrice A., Jenkins, Jerry W., Blaby-Haas, Crysten E., Purvine, Samuel O., O’Donnell, Samuel, Barry, Kerrie, Grimwood, Jane, Strenkert, Daniela, Kropat, Janette, Daum, Chris, Yoshinaga, Yuko, Goodstein, David M., Vallon, Olivier, Schmutz, Jeremy, Merchant, Sabeeha S.
Published in The Plant cell (23.12.2022)
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Published in The Plant cell (23.12.2022)
Journal Article