Manta: rapid detection of structural variants and indels for germline and cancer sequencing applications
Chen, Xiaoyu, Schulz-Trieglaff, Ole, Shaw, Richard, Barnes, Bret, Schlesinger, Felix, Källberg, Morten, Cox, Anthony J, Kruglyak, Semyon, Saunders, Christopher T
Published in Bioinformatics (15.04.2016)
Published in Bioinformatics (15.04.2016)
Get full text
Journal Article
Haplotype Estimation Using Sequencing Reads
Delaneau, Olivier, Howie, Bryan, Cox, Anthony J., Zagury, Jean-François, Marchini, Jonathan
Published in American journal of human genetics (03.10.2013)
Published in American journal of human genetics (03.10.2013)
Get full text
Journal Article
NxTrim: optimized trimming of Illumina mate pair reads
O'Connell, Jared, Schulz-Trieglaff, Ole, Carlson, Emma, Hims, Matthew M, Gormley, Niall A, Cox, Anthony J
Published in Bioinformatics (Oxford, England) (15.06.2015)
Published in Bioinformatics (Oxford, England) (15.06.2015)
Get full text
Journal Article
Canvas SPW: calling de novo copy number variants in pedigrees
Ivakhno, Sergii, Roller, Eric, Colombo, Camilla, Tedder, Philip, Cox, Anthony J
Published in Bioinformatics (01.02.2018)
Published in Bioinformatics (01.02.2018)
Get full text
Journal Article
NxRepair: error correction in de novo sequence assembly using Nextera mate pairs
Murphy, Rebecca R, O'Connell, Jared, Cox, Anthony J, Schulz-Trieglaff, Ole
Published in PeerJ (San Francisco, CA) (02.06.2015)
Published in PeerJ (San Francisco, CA) (02.06.2015)
Get full text
Journal Article
Large-scale compression of genomic sequence databases with the Burrows―Wheeler transform
COX, Anthony J, BAUER, Markus J, JAKOBI, Tobias, ROSONE, Giovanna
Published in Bioinformatics (Oxford, England) (01.06.2012)
Published in Bioinformatics (Oxford, England) (01.06.2012)
Get full text
Journal Article
AKT: ancestry and kinship toolkit
Arthur, Rudy, Schulz-Trieglaff, Ole, Cox, Anthony J, O'Connell, Jared
Published in Bioinformatics (Oxford, England) (01.01.2017)
Published in Bioinformatics (Oxford, England) (01.01.2017)
Get full text
Journal Article
A comprehensive catalogue of somatic mutations from a human cancer genome
Teague, Jon, Menzies, Andrew, Ye, Kai, Bauer, Markus J, Mudie, Laura J, Alipaz, Julie, Chen, Lina, Stratton, Michael R, Stebbings, Lucy A, McBride, David J, Gormley, Niall A, Ordóñez, Gonzalo R, Haudenschild, Christian D, Royce, Tom, Carter, Richard J, Schulz-Trieglaff, Ole B, Hims, Matthew M, Kokko-Gonzales, Paula I, Leroy, Catherine, Bentley, David R, Spiridou, Anastassia, Beare, David, Jia, Mingming, Williamson, David, Edkins, Sarah, Grocock, Russell J, Varela, Ignacio, Bignell, Graham R, Lin, Meng-Lay, Pleasance, Erin D, Stephens, Philip J, Szajkowski, Lukasz, Futreal, P. Andrew, Marshall, John, Chin, Lynda, Cox, Anthony J, James, Terena, Greenman, Chris D, Butler, Adam, Ross, Mark T, Campbell, Peter J, Ning, Zemin, Humphray, Sean J, Kingsbury, Zoya, Cheetham, R. Keira
Published in Nature (London) (14.01.2010)
Published in Nature (London) (14.01.2010)
Get full text
Journal Article
BEETL-fastq: a searchable compressed archive for DNA reads
Janin, Lilian, Schulz-Trieglaff, Ole, Cox, Anthony J
Published in Bioinformatics (Oxford, England) (01.10.2014)
Published in Bioinformatics (Oxford, England) (01.10.2014)
Get full text
Journal Article
Accurate whole human genome sequencing using reversible terminator chemistry
Loch, Jennifer A, Li, Heng, Walter, Klaudia, Liao, Arnold K, Chris Pinkard, D, Ivanov, Denis V, O'Neill, Michael J, Aniebo, Ify C, Haudenschild, Christian D, Ewan, Mark R, Earnshaw, David J, Ernest Sohna Sohna, Jean, Spence, Eric J, Worsley, Graham J, Goddard, Colin P, Bailey, David M. D, Ling Ng, Bee, Moon, Keith W, Carter, Richard J, Khrebtukova, Irina, Mullikin, James C, Parkinson, Michael L, Banerjee, Saibal, Harnish, Kevin, Sizto, Ning L, Etchin, Sergey S, Smith, Mark E, Shaw, Richard J, Novo, Sonia M, Ning, Zemin, Diakoumakos, Konstantinos D, Alam, Mohammed D, Bridgham, John A, Sluis, Johannes P, Mammen, Radhika M, Lok, Mitch, Egbujor, Ugonna C, Pickering, Lea, Scott Furey, W, Kumar, Anil, Mehta, Parul, Barbour, Selena G, Brown, Clive G, Rae, Vicki H, Luo, Shujun, Zuerlein, Mike, Torrance, Peta E, Hoschler, Katya, Rogers, Jane, Smith, Vincent P, Elmore, David W, Ostadan, Omead, Sabot, Andrea, Neil Cooley, R, Evers, Dirk J, Fedurco, Milan, Heyer, Narinder I, Karbelashvili, Mirian S, Black, Phillip J, Brown, Andrew A, Romieu, Anthony, Rawlings, Stephen R, Cox, Anthony J, Bignell, Helen R, Castillo, Nestor, Virk, Selene M, McCooke, Nick J, Durbin, Richard, Ellis, Darren J, Pliskin, Daniel P, Ruediger, Silke T, Boutell, Jonathan M, vandeVondele, Stephanie, Schenker, Martin R, Rasolonjatovo, Isabelle M. J, Hims, Matthew M, Benson, Kevin F, Yan, Juying, Seoane, Josefina M, Walcott, Gregory C, Irving, Leslie J, Rogers, John, Granieri, Philip A, Hurwitz, Steve, Milton, John, Smith, Geoffrey P, Rogert Bacigalupo, Maria C, McCauley, Patrick G, Sutton, Neil, Obradovic, Bojan, Tzonev, Svilen S, Stevens, Kim, Buermann, Dale H, Quijano, Victor J, Anastasi, Carole, Rigatti, Roberto, Benoit, Vincent A, Crake, Natasha R, Bundu, Abass A, Scally, Aylwyn
Published in Nature (06.11.2008)
Published in Nature (06.11.2008)
Get full text
Journal Article
tHapMix: simulating tumour samples through haplotype mixtures
Ivakhno, Sergii, Colombo, Camilla, Tanner, Stephen, Tedder, Philip, Berri, Stefano, Cox, Anthony J
Published in Bioinformatics (Oxford, England) (15.01.2017)
Published in Bioinformatics (Oxford, England) (15.01.2017)
Get full text
Journal Article
Genome Sequencing and Analysis of the Tasmanian Devil and Its Transmissible Cancer
Murchison, Elizabeth P., Schulz-Trieglaff, Ole B., Ning, Zemin, Alexandrov, Ludmil B., Bauer, Markus J., Fu, Beiyuan, Hims, Matthew, Ding, Zhihao, Ivakhno, Sergii, Stewart, Caitlin, Ng, Bee Ling, Wong, Wendy, Aken, Bronwen, White, Simon, Alsop, Amber, Becq, Jennifer, Bignell, Graham R., Cheetham, R. Keira, Cheng, William, Connor, Thomas R., Cox, Anthony J., Feng, Zhi-Ping, Gu, Yong, Grocock, Russell J., Harris, Simon R., Khrebtukova, Irina, Kingsbury, Zoya, Kowarsky, Mark, Kreiss, Alexandre, Luo, Shujun, Marshall, John, McBride, David J., Murray, Lisa, Pearse, Anne-Maree, Raine, Keiran, Rasolonjatovo, Isabelle, Shaw, Richard, Tedder, Philip, Tregidgo, Carolyn, Vilella, Albert J., Wedge, David C., Woods, Gregory M., Gormley, Niall, Humphray, Sean, Schroth, Gary, Smith, Geoffrey, Hall, Kevin, Searle, Stephen M.J., Carter, Nigel P., Papenfuss, Anthony T., Futreal, P. Andrew, Campbell, Peter J., Yang, Fengtang, Bentley, David R., Evers, Dirk J., Stratton, Michael R.
Published in Cell (17.02.2012)
Published in Cell (17.02.2012)
Get full text
Journal Article
metaBEETL: high-throughput analysis of heterogeneous microbial populations from shotgun DNA sequences
Ander, Christina, Schulz-Trieglaff, Ole B, Stoye, Jens, Cox, Anthony J
Published in BMC bioinformatics (10.04.2013)
Published in BMC bioinformatics (10.04.2013)
Get full text
Journal Article
Lightweight algorithms for constructing and inverting the BWT of string collections
Bauer, Markus J., Cox, Anthony J., Rosone, Giovanna
Published in Theoretical computer science (29.04.2013)
Published in Theoretical computer science (29.04.2013)
Get full text
Journal Article
Lightweight LCP construction for very large collections of strings
Cox, Anthony J., Garofalo, Fabio, Rosone, Giovanna, Sciortino, Marinella
Published in Journal of discrete algorithms (Amsterdam, Netherlands) (01.03.2016)
Published in Journal of discrete algorithms (Amsterdam, Netherlands) (01.03.2016)
Get full text
Journal Article