Mutational Strand Asymmetries in Cancer Genomes Reveal Mechanisms of DNA Damage and Repair
Haradhvala, Nicholas J., Polak, Paz, Stojanov, Petar, Covington, Kyle R., Shinbrot, Eve, Hess, Julian M., Rheinbay, Esther, Kim, Jaegil, Maruvka, Yosef E., Braunstein, Lior Z., Kamburov, Atanas, Hanawalt, Philip C., Wheeler, David A., Koren, Amnon, Lawrence, Michael S., Getz, Gad
Published in Cell (28.01.2016)
Published in Cell (28.01.2016)
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Journal Article
Comprehensive genomic analysis identifies novel subtypes and targets of triple-negative breast cancer
Burstein, Matthew D, Tsimelzon, Anna, Poage, Graham M, Covington, Kyle R, Contreras, Alejandro, Fuqua, Suzanne A W, Savage, Michelle I, Osborne, C Kent, Hilsenbeck, Susan G, Chang, Jenny C, Mills, Gordon B, Lau, Ching C, Brown, Powel H
Published in Clinical cancer research (01.04.2015)
Published in Clinical cancer research (01.04.2015)
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Journal Article
Genomic profiling of Sézary syndrome identifies alterations of key T cell signaling and differentiation genes
Wang, Linghua, Ni, Xiao, Covington, Kyle R, Yang, Betty Y, Shiu, Jessica, Zhang, Xiang, Xi, Liu, Meng, Qingchang, Langridge, Timothy, Drummond, Jennifer, Donehower, Lawrence A, Doddapaneni, Harshavardhan, Muzny, Donna M, Gibbs, Richard A, Wheeler, David A, Duvic, Madeleine
Published in Nature genetics (01.12.2015)
Published in Nature genetics (01.12.2015)
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Journal Article
Exonuclease mutations in DNA polymerase epsilon reveal replication strand specific mutation patterns and human origins of replication
Shinbrot, Eve, Henninger, Erin E, Weinhold, Nils, Covington, Kyle R, Göksenin, A Yasemin, Schultz, Nikolaus, Chao, Hsu, Doddapaneni, HarshaVardhan, Muzny, Donna M, Gibbs, Richard A, Sander, Chris, Pursell, Zachary F, Wheeler, David A
Published in Genome research (01.11.2014)
Published in Genome research (01.11.2014)
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Journal Article
Mutually exclusive recurrent somatic mutations in MAP2K1 and BRAF support a central role for ERK activation in LCH pathogenesis
Chakraborty, Rikhia, Hampton, Oliver A., Shen, Xiaoyun, Simko, Stephen J., Shih, Albert, Abhyankar, Harshal, Lim, Karen Phaik Har, Covington, Kyle R., Trevino, Lisa, Dewal, Ninad, Muzny, Donna M., Doddapaneni, Harshavardhan, Hu, Jianhong, Wang, Linghua, Lupo, Philip J., Hicks, M. John, Bonilla, Diana L., Dwyer, Karen C., Berres, Marie-Luise, Poulikakos, Poulikos I., Merad, Miriam, McClain, Kenneth L., Wheeler, David A., Allen, Carl E., Parsons, D. Williams
Published in Blood (06.11.2014)
Published in Blood (06.11.2014)
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Journal Article
Trans-ancestry mutational landscape of hepatocellular carcinoma genomes
Totoki, Yasushi, Tatsuno, Kenji, Covington, Kyle R, Ueda, Hiroki, Creighton, Chad J, Kato, Mamoru, Tsuji, Shingo, Donehower, Lawrence A, Slagle, Betty L, Nakamura, Hiromi, Yamamoto, Shogo, Shinbrot, Eve, Hama, Natsuko, Lehmkuhl, Megan, Hosoda, Fumie, Arai, Yasuhito, Walker, Kim, Dahdouli, Mahmoud, Gotoh, Kengo, Nagae, Genta, Gingras, Marie-Claude, Muzny, Donna M, Ojima, Hidenori, Shimada, Kazuaki, Midorikawa, Yutaka, Goss, John A, Cotton, Ronald, Hayashi, Akimasa, Shibahara, Junji, Ishikawa, Shumpei, Guiteau, Jacfranz, Tanaka, Mariko, Urushidate, Tomoko, Ohashi, Shoko, Okada, Naoko, Doddapaneni, Harsha, Wang, Min, Zhu, Yiming, Dinh, Huyen, Okusaka, Takuji, Kokudo, Norihiro, Kosuge, Tomoo, Takayama, Tadatoshi, Fukayama, Masashi, Gibbs, Richard A, Wheeler, David A, Aburatani, Hiroyuki, Shibata, Tatsuhiro
Published in Nature genetics (01.12.2014)
Published in Nature genetics (01.12.2014)
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Journal Article
Molecular risk prediction in cutaneous melanoma: A meta-analysis of the 31-gene expression profile prognostic test in 1,479 patients
Greenhaw, Bradley N., Covington, Kyle R., Kurley, Sarah J., Yeniay, Yildiray, Cao, Nhat Anh, Plasseraud, Kristen M., Cook, Robert W., Hsueh, Eddy C., Gastman, Brian R., Wei, Maria L.
Published in Journal of the American Academy of Dermatology (01.09.2020)
Published in Journal of the American Academy of Dermatology (01.09.2020)
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Journal Article
Mutational landscape of aggressive cutaneous squamous cell carcinoma
Pickering, Curtis R, Zhou, Jane H, Lee, J Jack, Drummond, Jennifer A, Peng, S Andrew, Saade, Rami E, Tsai, Kenneth Y, Curry, Jonathan L, Tetzlaff, Michael T, Lai, Stephen Y, Yu, Jun, Muzny, Donna M, Doddapaneni, Harshavardhan, Shinbrot, Eve, Covington, Kyle R, Zhang, Jianhua, Seth, Sahil, Caulin, Carlos, Clayman, Gary L, El-Naggar, Adel K, Gibbs, Richard A, Weber, Randal S, Myers, Jeffrey N, Wheeler, David A, Frederick, Mitchell J
Published in Clinical cancer research (15.12.2014)
Published in Clinical cancer research (15.12.2014)
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Journal Article
Validation of a 40-gene expression profile test to predict metastatic risk in localized high-risk cutaneous squamous cell carcinoma
Wysong, Ashley, Newman, Jason G., Covington, Kyle R., Kurley, Sarah J., Ibrahim, Sherrif F., Farberg, Aaron S., Bar, Anna, Cleaver, Nathan J., Somani, Ally-Khan, Panther, David, Brodland, David G., Zitelli, John, Toyohara, Jennifer, Maher, Ian A., Xia, Yang, Bibee, Kristin, Griego, Robert, Rigel, Darrell S., Meldi Plasseraud, Kristen, Estrada, Sarah, Sholl, Lauren Meldi, Johnson, Clare, Cook, Robert W., Schmults, Chrysalyne D., Arron, Sarah T.
Published in Journal of the American Academy of Dermatology (01.02.2021)
Published in Journal of the American Academy of Dermatology (01.02.2021)
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Journal Article
Phosphorylated and sumoylation-deficient progesterone receptors drive proliferative gene signatures during breast cancer progression
Knutson, Todd P, Daniel, Andrea R, Fan, Danhua, Silverstein, Kevin At, Covington, Kyle R, Fuqua, Suzanne Aw, Lange, Carol A
Published in Breast cancer research : BCR (14.06.2012)
Published in Breast cancer research : BCR (14.06.2012)
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Journal Article
Optimizing treatment approaches for patients with cutaneous melanoma by integrating clinical and pathologic features with the 31-gene expression profile test
Jarell, Abel, Gastman, Brian R., Dillon, Larry D., Hsueh, Eddy C., Podlipnik, Sebastian, Covington, Kyle R., Cook, Robert W., Bailey, Christine N., Quick, Ann P., Martin, Brian J., Kurley, Sarah J., Goldberg, Matthew S., Puig, Susana
Published in Journal of the American Academy of Dermatology (01.12.2022)
Published in Journal of the American Academy of Dermatology (01.12.2022)
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Journal Article
Accumulation of Molecular Aberrations Distinctive to Hepatocellular Carcinoma Progression
Midorikawa, Yutaka, Yamamoto, Shogo, Tatsuno, Kenji, Renard-Guillet, Claire, Tsuji, Shingo, Hayashi, Akimasa, Ueda, Hiroki, Fukuda, Shiro, Fujita, Takanori, Katoh, Hiroto, Ishikawa, Shumpei, Covington, Kyle R, Creighton, Chad J, Sugitani, Masahiko, Wheeler, David A, Shibata, Tatsuhiro, Nagae, Genta, Takayama, Tadatoshi, Aburatani, Hiroyuki
Published in Cancer research (Chicago, Ill.) (15.09.2020)
Published in Cancer research (Chicago, Ill.) (15.09.2020)
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Journal Article
Multilevel Genomics-Based Taxonomy of Renal Cell Carcinoma
Chen, Fengju, Zhang, Yiqun, Şenbabaoğlu, Yasin, Ciriello, Giovanni, Yang, Lixing, Reznik, Ed, Shuch, Brian, Micevic, Goran, De Velasco, Guillermo, Shinbrot, Eve, Noble, Michael S., Lu, Yiling, Covington, Kyle R., Xi, Liu, Drummond, Jennifer A., Muzny, Donna, Kang, Hyojin, Lee, Junehawk, Tamboli, Pheroze, Reuter, Victor, Shelley, Carl Simon, Kaipparettu, Benny A., Bottaro, Donald P., Godwin, Andrew K., Gibbs, Richard A., Getz, Gad, Kucherlapati, Raju, Park, Peter J., Sander, Chris, Henske, Elizabeth P., Zhou, Jane H., Kwiatkowski, David J., Ho, Thai H., Choueiri, Toni K., Hsieh, James J., Akbani, Rehan, Mills, Gordon B., Hakimi, A. Ari, Wheeler, David A., Creighton, Chad J.
Published in Cell reports (Cambridge) (15.03.2016)
Published in Cell reports (Cambridge) (15.03.2016)
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Journal Article
NF-κB and STAT3 co-operation enhances high glucose induced aggressiveness of cholangiocarcinoma cells
Saengboonmee, Charupong, Phoomak, Chatchai, Supabphol, Suangson, Covington, Kyle R., Hampton, Oliver, Wongkham, Chaisiri, Gibbs, Richard A., Umezawa, Kazuo, Seubwai, Wunchana, Gingras, Marie-Claude, Wongkham, Sopit
Published in Life sciences (1973) (01.12.2020)
Published in Life sciences (1973) (01.12.2020)
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Journal Article
Analysis of ZTE MRI application to sandstone and carbonate
Covington, Kyle L., Goroncy, Alexander K., Lehmann, Teresa E., Kou, Zuhao, Wang, Heng, Alvarado, Vladimir
Published in AIChE journal (01.02.2021)
Published in AIChE journal (01.02.2021)
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Journal Article
Leptin Mediates Tumor―Stromal Interactions That Promote the Invasive Growth of Breast Cancer Cells
BARONE, Ines, CATALANO, Stefania, ANDO, Sebastiano, GELSOMINO, Luca, MARSICO, Stefania, GIORDANO, Cinzia, PANZA, Salvatore, BONOFIGLIO, Daniela, BOSSI, Gianluca, COVINGTON, Kyle R, FUQUA, Suzanne A. W
Published in Cancer research (Chicago, Ill.) (15.03.2012)
Published in Cancer research (Chicago, Ill.) (15.03.2012)
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Journal Article
Interim analysis of survival in a prospective, multi-center registry cohort of cutaneous melanoma tested with a prognostic 31-gene expression profile test
Hsueh, Eddy C, DeBloom, James R, Lee, Jonathan, Sussman, Jeffrey J, Covington, Kyle R, Middlebrook, Brooke, Johnson, Clare, Cook, Robert W, Slingluff, Jr, Craig L, McMasters, Kelly M
Published in Journal of hematology and oncology (29.08.2017)
Published in Journal of hematology and oncology (29.08.2017)
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Journal Article
Performance of a prognostic 31-gene expression profile in an independent cohort of 523 cutaneous melanoma patients
Zager, Jonathan S, Gastman, Brian R, Leachman, Sancy, Gonzalez, Rene C, Fleming, Martin D, Ferris, Laura K, Ho, Jonhan, Miller, Alexander R, Cook, Robert W, Covington, Kyle R, Meldi-Plasseraud, Kristen, Middlebrook, Brooke, Kaminester, Lewis H, Greisinger, Anthony, Estrada, Sarah I, Pariser, David M, Cranmer, Lee D, Messina, Jane L, Vetto, John T, Wayne, Jeffrey D, Delman, Keith A, Lawson, David H, Gerami, Pedram
Published in BMC cancer (05.02.2018)
Published in BMC cancer (05.02.2018)
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Journal Article