A hierarchical classification of polysaccharide lyases for glycogenomics
Lombard, Vincent, Bernard, Thomas, Rancurel, Corinne, Brumer, Harry, Coutinho, Pedro M, Henrissat, Bernard
Published in Biochemical journal (15.12.2010)
Published in Biochemical journal (15.12.2010)
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Cello-Oligosaccharide Oxidation Reveals Differences between Two Lytic Polysaccharide Monooxygenases (Family GH61) from Podospora anserina
Bey, Mathieu, Zhou, Simeng, Poidevin, Laetitia, Henrissat, Bernard, Coutinho, Pedro M, Berrin, Jean-Guy, Sigoillot, Jean-Claude
Published in Applied and Environmental Microbiology (01.01.2013)
Published in Applied and Environmental Microbiology (01.01.2013)
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Journal Article
Multiple lateral gene transfers and duplications have promoted plant parasitism ability in nematodes
Danchin, Etienne G. J., Rosso, Marie-Noëlle, Vieira, Paulo, de Almeida-Engler, Janice, Coutinho, Pedro M., Henrissat, Bernard, Abad, Pierre
Published in Proceedings of the National Academy of Sciences - PNAS (12.10.2010)
Published in Proceedings of the National Academy of Sciences - PNAS (12.10.2010)
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Journal Article
Genome of the red alga Porphyridium purpureum
Bhattacharya, Debashish, Price, Dana C., Chan, Cheong Xin, Qiu, Huan, Rose, Nicholas, Ball, Steven, Weber, Andreas P. M., Cecilia Arias, Maria, Henrissat, Bernard, Coutinho, Pedro M., Krishnan, Anagha, Zäuner, Simone, Morath, Shannon, Hilliou, Frédérique, Egizi, Andrea, Perrineau, Marie-Mathilde, Yoon, Hwan Su
Published in Nature communications (17.06.2013)
Published in Nature communications (17.06.2013)
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Journal Article
Characterizing a model human gut microbiota composed of members of its two dominant bacterial phyla
Mahowald, Michael A, Rey, Federico E, Seedorf, Henning, Turnbaugh, Peter J, Fulton, Robert S, Wollam, Aye, Shah, Neha, Wang, Chunyan, Magrini, Vincent, Wilson, Richard K, Cantarel, Brandi L, Coutinho, Pedro M, Henrissat, Bernard, Crock, Lara W, Russell, Alison, Verberkmoes, Nathan C, Hettich, Robert L, Gordon, Jeffrey I
Published in Proceedings of the National Academy of Sciences - PNAS (07.04.2009)
Published in Proceedings of the National Academy of Sciences - PNAS (07.04.2009)
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Functional metagenomics to mine the human gut microbiome for dietary fiber catabolic enzymes
Tasse, Lena, Bercovici, Juliette, Pizzut-Serin, Sandra, Robe, Patrick, Tap, Julien, Klopp, Christophe, Cantarel, Brandi L, Coutinho, Pedro M, Henrissat, Bernard, Leclerc, Marion, Doré, Joël, Monsan, Pierre, Remaud-Simeon, Magali, Potocki-Veronese, Gabrielle
Published in Genome research (01.11.2010)
Published in Genome research (01.11.2010)
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Gene-centric metagenomics of the fiber-adherent bovine rumen microbiome reveals forage specific glycoside hydrolases
Brulc, Jennifer M, Antonopoulos, Dionysios A, Berg Miller, Margret E, Wilson, Melissa K, Yannarell, Anthony C, Dinsdale, Elizabeth A, Edwards, Robert E, Frank, Edward D, Emerson, Joanne B, Wacklin, Pirjo, Coutinho, Pedro M, Henrissat, Bernard, Nelson, Karen E, White, Bryan A
Published in Proceedings of the National Academy of Sciences - PNAS (10.02.2009)
Published in Proceedings of the National Academy of Sciences - PNAS (10.02.2009)
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Journal Article
An Evolving Hierarchical Family Classification for Glycosyltransferases
Coutinho, Pedro M., Deleury, Emeline, Davies, Gideon J., Henrissat, Bernard
Published in Journal of molecular biology (25.04.2003)
Published in Journal of molecular biology (25.04.2003)
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Journal Article
Genomic and metabolic adaptations of Methanobrevibacter smithii to the human gut
Samuel, Buck S, Hansen, Elizabeth E, Manchester, Jill K, Coutinho, Pedro M, Henrissat, Bernard, Fulton, Robert, Latreille, Philippe, Kim, Kung, Wilson, Richard K, Gordon, Jeffrey I
Published in Proceedings of the National Academy of Sciences - PNAS (19.06.2007)
Published in Proceedings of the National Academy of Sciences - PNAS (19.06.2007)
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The genome of Nectria haematococca: contribution of supernumerary chromosomes to gene expansion
Coleman, Jeffrey J, Rounsley, Steve D, Rodriguez-Carres, Marianela, Kuo, Alan, Wasmann, Catherine C, Grimwood, Jane, Schmutz, Jeremy, Taga, Masatoki, White, Gerard J, Zhou, Shiguo, Schwartz, David C, Freitag, Michael, Ma, Li-Jun, Danchin, Etienne G J, Henrissat, Bernard, Coutinho, Pedro M, Nelson, David R, Straney, Dave, Napoli, Carolyn A, Barker, Bridget M, Gribskov, Michael, Rep, Martijn, Kroken, Scott, Molnár, István, Rensing, Christopher, Kennell, John C, Zamora, Jorge, Farman, Mark L, Selker, Eric U, Salamov, Asaf, Shapiro, Harris, Pangilinan, Jasmyn, Lindquist, Erika, Lamers, Casey, Grigoriev, Igor V, Geiser, David M, Covert, Sarah F, Temporini, Esteban, Vanetten, Hans D
Published in PLoS genetics (01.08.2009)
Published in PLoS genetics (01.08.2009)
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How nature can exploit nonspecific catalytic and carbohydrate binding modules to create enzymatic specificity
Cuskin, Fiona, Flint, James E., Gloster, Tracey M., Morland, Carl, Baslé, Arnaud, Henrissat, Bernard, Coutinho, Pedro M., Strazzulli, Andrea, Solovyova, Alexandra S., Davies, Gideon J., Gilbert, Harry J.
Published in Proceedings of the National Academy of Sciences - PNAS (18.12.2012)
Published in Proceedings of the National Academy of Sciences - PNAS (18.12.2012)
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Carbohydrate-active enzymes from the zygomycete fungus Rhizopus oryzae: a highly specialized approach to carbohydrate degradation depicted at genome level
Battaglia, Evy, Benoit, Isabelle, van den Brink, Joost, Wiebenga, Ad, Coutinho, Pedro M, Henrissat, Bernard, de Vries, Ronald P
Published in BMC genomics (17.01.2011)
Published in BMC genomics (17.01.2011)
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Journal Article
Podospora anserina Hemicellulases Potentiate the Trichoderma reesei Secretome for Saccharification of Lignocellulosic Biomass
Couturier, Marie, Haon, Mireille, Coutinho, Pedro M, Henrissat, Bernard, Lesage-Meessen, Laurence, Berrin, Jean-Guy
Published in Applied and Environmental Microbiology (01.01.2011)
Published in Applied and Environmental Microbiology (01.01.2011)
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Journal Article
Degradation of different pectins by fungi: correlations and contrasts between the pectinolytic enzyme sets identified in genomes and the growth on pectins of different origin
Benoit, Isabelle, Coutinho, Pedro M, Schols, Henk A, Gerlach, Jan P, Henrissat, Bernard, de Vries, Ronald P
Published in BMC genomics (19.07.2012)
Published in BMC genomics (19.07.2012)
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Journal Article
Evolution of symbiotic bacteria in the distal human intestine
Xu, Jian, Mahowald, Michael A, Ley, Ruth E, Lozupone, Catherine A, Hamady, Micah, Martens, Eric C, Henrissat, Bernard, Coutinho, Pedro M, Minx, Patrick, Latreille, Philippe, Cordum, Holland, Van Brunt, Andrew, Kim, Kyung, Fulton, Robert S, Fulton, Lucinda A, Clifton, Sandra W, Wilson, Richard K, Knight, Robin D, Gordon, Jeffrey I
Published in PLoS biology (01.07.2007)
Published in PLoS biology (01.07.2007)
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Post-genomic analyses of fungal lignocellulosic biomass degradation reveal the unexpected potential of the plant pathogen Ustilago maydis
Couturier, Marie, Navarro, David, Olivé, Caroline, Chevret, Didier, Haon, Mireille, Favel, Anne, Lesage-Meessen, Laurence, Henrissat, Bernard, Coutinho, Pedro M, Berrin, Jean-Guy
Published in BMC genomics (02.02.2012)
Published in BMC genomics (02.02.2012)
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Journal Article
Diversity and Strain Specificity of Plant Cell Wall Degrading Enzymes Revealed by the Draft Genome of Ruminococcus flavefaciens FD-1
Miller, Margret E. Berg, Antonopoulos, Dionysios A, Rincon, Marco T, Band, Mark, Bari, Albert, Akraiko, Tatsiana, Hernandez, Alvaro, Thimmapuram, Jyothi, Henrissat, Bernard, Coutinho, Pedro M, Borovok, Ilya, Jindou, Sadanari, Lamed, Raphael, Flint, Harry J, Bayer, Edward A, White, Bryan A
Published in PloS one (14.08.2009)
Published in PloS one (14.08.2009)
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