SARTools: A DESeq2- and EdgeR-Based R Pipeline for Comprehensive Differential Analysis of RNA-Seq Data
Varet, Hugo, Brillet-Guéguen, Loraine, Coppée, Jean-Yves, Dillies, Marie-Agnès
Published in PloS one (09.06.2016)
Published in PloS one (09.06.2016)
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Journal Article
Intracellular Staphylococcus aureus persisters upon antibiotic exposure
Peyrusson, Frédéric, Varet, Hugo, Nguyen, Tiep Khac, Legendre, Rachel, Sismeiro, Odile, Coppée, Jean-Yves, Wolz, Christiane, Tenson, Tanel, Van Bambeke, Françoise
Published in Nature communications (04.05.2020)
Published in Nature communications (04.05.2020)
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Journal Article
A Role for SIRT2-Dependent Histone H3K18 Deacetylation in Bacterial Infection
Eskandarian, Haig A., Impens, Francis, Nahori, Marie-Anne, Soubigou, Guillaume, Coppée, Jean-Yves, Cossart, Pascale, Hamon, Mélanie A.
Published in Science (American Association for the Advancement of Science) (02.08.2013)
Published in Science (American Association for the Advancement of Science) (02.08.2013)
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Journal Article
The Legionella pneumophila genome evolved to accommodate multiple regulatory mechanisms controlled by the CsrA-system
Sahr, Tobias, Rusniok, Christophe, Impens, Francis, Oliva, Giulia, Sismeiro, Odile, Coppée, Jean-Yves, Buchrieser, Carmen
Published in PLoS genetics (17.02.2017)
Published in PLoS genetics (17.02.2017)
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Journal Article
The Listeria transcriptional landscape from saprophytism to virulence
TOLEDO-ARANA, Alejandro, DUSSURGET, Olivier, BARTHELEMY, Mathieu, VERGASSOLA, Massimo, NAHORI, Marie-Anne, SOUBIGOU, Guillaume, REGNAULT, Béatrice, COPPEE, Jean-Yves, LECUIT, Marc, JOHANSSON, Jörgen, COSSART, Pascale, NIKITAS, Georgios, SESTO, Nina, GUET-REVILLET, Hélène, BALESTRINO, Damien, LOH, Edmund, GRIPENLAND, Jonas, TIENSUU, Teresa, VAITKEVICIUS, Karolis
Published in Nature (London) (18.06.2009)
Published in Nature (London) (18.06.2009)
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Journal Article
Genome-wide identification of regulatory RNAs in the human pathogen Clostridium difficile
Soutourina, Olga A, Monot, Marc, Boudry, Pierre, Saujet, Laure, Pichon, Christophe, Sismeiro, Odile, Semenova, Ekaterina, Severinov, Konstantin, Le Bouguenec, Chantal, Coppée, Jean-Yves, Dupuy, Bruno, Martin-Verstraete, Isabelle
Published in PLoS genetics (01.05.2013)
Published in PLoS genetics (01.05.2013)
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Journal Article
Enteric bacteria boost defences against oxidative stress in Entamoeba histolytica
Varet, Hugo, Shaulov, Yana, Sismeiro, Odile, Trebicz-Geffen, Meirav, Legendre, Rachel, Coppée, Jean-Yves, Ankri, Serge, Guillen, Nancy
Published in Scientific reports (13.06.2018)
Published in Scientific reports (13.06.2018)
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Journal Article
Identification and characterization of the genetic changes responsible for the characteristic smooth‐to‐rough morphotype alterations of clinically persistent Mycobacterium abscessus
Pawlik, Alexandre, Garnier, Guillaume, Orgeur, Mickael, Tong, Pin, Lohan, Amanda, Le Chevalier, Fabien, Sapriel, Guillaume, Roux, Anne‐Laure, Conlon, Kevin, Honoré, Nadine, Dillies, Marie‐Agnès, Ma, Laurence, Bouchier, Christiane, Coppée, Jean‐Yves, Gaillard, Jean‐Louis, Gordon, Stephen V., Loftus, Brendan, Brosch, Roland, Herrmann, Jean Louis
Published in Molecular microbiology (01.11.2013)
Published in Molecular microbiology (01.11.2013)
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Journal Article
Transcytosis subversion by M cell-to-enterocyte spread promotes Shigella flexneri and Listeria monocytogenes intracellular bacterial dissemination
Rey, Camille, Chang, Yuen-Yan, Latour-Lambert, Patricia, Varet, Hugo, Proux, Caroline, Legendre, Rachel, Coppée, Jean-Yves, Enninga, Jost
Published in PLoS pathogens (13.04.2020)
Published in PLoS pathogens (13.04.2020)
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Journal Article
Mycobacterium abscessus virulence traits unraveled by transcriptomic profiling in amoeba and macrophages
Dubois, Violaine, Pawlik, Alexandre, Bories, Anouchka, Le Moigne, Vincent, Sismeiro, Odile, Legendre, Rachel, Varet, Hugo, Rodríguez-Ordóñez, María Del Pilar, Gaillard, Jean-Louis, Coppée, Jean-Yves, Brosch, Roland, Herrmann, Jean-Louis, Girard-Misguich, Fabienne
Published in PLoS pathogens (08.11.2019)
Published in PLoS pathogens (08.11.2019)
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Journal Article
Comparative analysis of viral RNA signatures on different RIG-I-like receptors
Sanchez David, Raul Y, Combredet, Chantal, Sismeiro, Odile, Dillies, Marie-Agnès, Jagla, Bernd, Coppée, Jean-Yves, Mura, Marie, Guerbois Galla, Mathilde, Despres, Philippe, Tangy, Frédéric, Komarova, Anastassia V
Published in eLife (24.03.2016)
Published in eLife (24.03.2016)
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Journal Article
Identification of the virulence landscape essential for Entamoeba histolytica invasion of the human colon
Thibeaux, Roman, Weber, Christian, Hon, Chung-Chau, Dillies, Marie-Agnès, Avé, Patrick, Coppée, Jean-Yves, Labruyère, Elisabeth, Guillén, Nancy
Published in PLoS pathogens (01.12.2013)
Published in PLoS pathogens (01.12.2013)
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Journal Article
Coregulation of extracellular vesicle production and fluconazole susceptibility in Cryptococcus neoformans
Rizzo, Juliana, Trottier, Adèle, Moyrand, Frédérique, Coppée, Jean-Yves, Maufrais, Corinne, Zimbres, Ana Claudia G, Dang, Thi Tuong Vi, Alanio, Alexandre, Desnos-Ollivier, Marie, Mouyna, Isabelle, Péhau-Arnaude, Gérard, Commere, Pierre-Henri, Novault, Sophie, Ene, Iuliana V, Nimrichter, Leonardo, Rodrigues, Marcio L, Janbon, Guilhem
Published in mBio (13.06.2023)
Published in mBio (13.06.2023)
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Journal Article
Alternative TSS use is widespread in Cryptococcus fungi in response to environmental cues and regulated genome-wide by the transcription factor Tur1
Dang, Thi Tuong Vi, Maufrais, Corinne, Colin, Jessie, Moyrand, Frédérique, Mouyna, Isabelle, Coppée, Jean-Yves, Onyishi, Chinaemerem U., Lipecka, Joanna, Guerrera, Ida Chiara, May, Robin C., Janbon, Guilhem
Published in PLoS biology (25.07.2024)
Published in PLoS biology (25.07.2024)
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Journal Article
BAHD1 haploinsufficiency results in anxiety-like phenotypes in male mice
Pourpre, Renaud, Naudon, Laurent, Meziane, Hamid, Lakisic, Goran, Jouneau, Luc, Varet, Hugo, Legendre, Rachel, Wendling, Olivia, Selloum, Mohammed, Proux, Caroline, Coppée, Jean-Yves, Herault, Yann, Bierne, Hélène
Published in PloS one (14.05.2020)
Published in PloS one (14.05.2020)
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Journal Article
Virulence strategies for infecting phagocytes deduced from the in vivo transcriptional program of Legionella pneumophila
Brüggemann, Holger, Hagman, Arne, Jules, Matthieu, Sismeiro, Odile, Dillies, Marie‐Agnès, Gouyette, Catherine, Kunst, Frank, Steinert, Michael, Heuner, Klaus, Coppée, Jean‐Yves, Buchrieser, Carmen
Published in Cellular microbiology (01.08.2006)
Published in Cellular microbiology (01.08.2006)
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Journal Article
Naive and primed murine pluripotent stem cells have distinct miRNA expression profiles
Jouneau, Alice, Ciaudo, Constance, Sismeiro, Odile, Brochard, Vincent, Jouneau, Luc, Vandormael-Pournin, Sandrine, Coppée, Jean-Yves, Zhou, Qi, Heard, Edith, Antoniewski, Christophe, Cohen-Tannoudji, Michel
Published in RNA (Cambridge) (01.02.2012)
Published in RNA (Cambridge) (01.02.2012)
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Journal Article
4-Methylcytosine DNA modification is critical for global epigenetic regulation and virulence in the human pathogen Leptospira interrogans
Gaultney, Robert A, Vincent, Antony T, Lorioux, Céline, Coppée, Jean-Yves, Sismeiro, Odile, Varet, Hugo, Legendre, Rachel, Cockram, Charlotte A, Veyrier, Frédéric J, Picardeau, Mathieu
Published in Nucleic acids research (02.12.2020)
Published in Nucleic acids research (02.12.2020)
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Journal Article
Massive Activation of Archaeal Defense Genes during Viral Infection
Quax, Tessa E F, Voet, Marleen, Sismeiro, Odile, Dillies, Marie-Agnes, Jagla, Bernd, Coppée, Jean-Yves, Sezonov, Guennadi, Forterre, Patrick, van der Oost, John, Lavigne, Rob, Prangishvili, David
Published in Journal of Virology (01.08.2013)
Published in Journal of Virology (01.08.2013)
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