The landscape of transcriptional and translational changes over 22 years of bacterial adaptation
Favate, John S, Liang, Shun, Cope, Alexander L, Yadavalli, Srujana S, Shah, Premal
Published in eLife (10.10.2022)
Published in eLife (10.10.2022)
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Journal Article
On the Decoupling of Evolutionary Changes in mRNA and Protein Levels
Jiang, Daohan, Cope, Alexander L, Zhang, Jianzhi, Pennell, Matt
Published in Molecular biology and evolution (03.08.2023)
Published in Molecular biology and evolution (03.08.2023)
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Journal Article
Isolation, profiling, and tracking of extracellular vesicle cargo in Caenorhabditis elegans
Nikonorova, Inna A., Wang, Juan, Cope, Alexander L., Tilton, Peter E., Power, Kaiden M., Walsh, Jonathon D., Akella, Jyothi S., Krauchunas, Amber R., Shah, Premal, Barr, Maureen M.
Published in Current biology (09.05.2022)
Published in Current biology (09.05.2022)
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Journal Article
riboviz 2: a flexible and robust ribosome profiling data analysis and visualization workflow
Cope, Alexander L, Anderson, Felicity, Favate, John, Jackson, Michael, Mok, Amanda, Kurowska, Anna, Liu, Junchen, MacKenzie, Emma, Shivakumar, Vikram, Tilton, Peter, Winterbourne, Sophie M, Xue, Siyin, Kavoussanakis, Kostas, Lareau, Liana F, Shah, Premal, Wallace, Edward W J
Published in Bioinformatics (12.04.2022)
Published in Bioinformatics (12.04.2022)
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Journal Article
Promoter-sequence determinants and structural basis of primer-dependent transcription initiation in Escherichia coli
Skalenko, Kyle S., Li, Lingting, Zhang, Yuanchao, Vvedenskaya, Irina O., Winkelman, Jared T., Cope, Alexander L., Taylor, Deanne M., Shah, Premal, Ebright, Richard H., Kinney, Justin B., Zhang, Yu, Nickels, Bryce E.
Published in Proceedings of the National Academy of Sciences - PNAS (06.07.2021)
Published in Proceedings of the National Academy of Sciences - PNAS (06.07.2021)
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Journal Article
Identification and characterization of proteins of unknown function (PUFs) in Clostridium thermocellum DSM 1313 strains as potential genetic engineering targets
Poudel, Suresh, Cope, Alexander L, O'Dell, Kaela B, Guss, Adam M, Seo, Hyeongmin, Trinh, Cong T, Hettich, Robert L
Published in Biotechnology for biofuels (10.05.2021)
Published in Biotechnology for biofuels (10.05.2021)
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Journal Article
Decoupling of evolutionary changes in mRNA and protein levels
Jiang, Daohan, Cope, Alexander L, Zhang, Jianzhi, Pennell, Matt
Published in bioRxiv : the preprint server for biology (08.04.2023)
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Published in bioRxiv : the preprint server for biology (08.04.2023)
Journal Article