Deep learning enables robust assessment and selection of human blastocysts after in vitro fertilization
Khosravi, Pegah, Kazemi, Ehsan, Zhan, Qiansheng, Malmsten, Jonas E., Toschi, Marco, Zisimopoulos, Pantelis, Sigaras, Alexandros, Lavery, Stuart, Cooper, Lee A. D., Hickman, Cristina, Meseguer, Marcos, Rosenwaks, Zev, Elemento, Olivier, Zaninovic, Nikica, Hajirasouliha, Iman
Published in NPJ digital medicine (04.04.2019)
Published in NPJ digital medicine (04.04.2019)
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Journal Article
MR imaging predictors of molecular profile and survival: multi-institutional study of the TCGA glioblastoma data set
Gutman, David A, Cooper, Lee A D, Hwang, Scott N, Holder, Chad A, Gao, Jingjing, Aurora, Tarun D, Dunn, Jr, William D, Scarpace, Lisa, Mikkelsen, Tom, Jain, Rajan, Wintermark, Max, Jilwan, Manal, Raghavan, Prashant, Huang, Erich, Clifford, Robert J, Mongkolwat, Pattanasak, Kleper, Vladimir, Freymann, John, Kirby, Justin, Zinn, Pascal O, Moreno, Carlos S, Jaffe, Carl, Colen, Rivka, Rubin, Daniel L, Saltz, Joel, Flanders, Adam, Brat, Daniel J
Published in Radiology (01.05.2013)
Published in Radiology (01.05.2013)
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Journal Article
The proneural molecular signature is enriched in oligodendrogliomas and predicts improved survival among diffuse gliomas
Cooper, Lee A D, Gutman, David A, Long, Qi, Johnson, Brent A, Cholleti, Sharath R, Kurc, Tahsin, Saltz, Joel H, Brat, Daniel J, Moreno, Carlos S
Published in PloS one (03.09.2010)
Published in PloS one (03.09.2010)
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Journal Article
Tumor-Infiltrating Lymphocytes in Glioblastoma Are Associated with Specific Genomic Alterations and Related to Transcriptional Class
CALEB RUTLEDGE, W, JUN KONG, ALDAPE, Kenneth D, MCLENDON, Roger E, LEHMAN, Norman L, RYAN MILLER, C, SCHNIEDERJAN, Matthew J, BRENNAN, Cameron W, SALTZ, Joel H, MORENO, Carlos S, BRAT, Daniel J, JINGJING GAO, GUTMAN, David A, COOPER, Lee A. D, APPIN, Christina, PARK, Yuna, SCARPACE, Lisa, MIKKELSEN, Tom, COHEN, Mark L
Published in Clinical cancer research (15.09.2013)
Published in Clinical cancer research (15.09.2013)
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Journal Article
Whole-brain spectroscopic MRI biomarkers identify infiltrating margins in glioblastoma patients
Cordova, James S, Shu, Hui-Kuo G, Liang, Zhongxing, Gurbani, Saumya S, Cooper, Lee A D, Holder, Chad A, Olson, Jeffrey J, Kairdolf, Brad, Schreibmann, Eduard, Neill, Stewart G, Hadjipanayis, Constantinos G, Shim, Hyunsuk
Published in Neuro-oncology (Charlottesville, Va.) (01.08.2016)
Published in Neuro-oncology (Charlottesville, Va.) (01.08.2016)
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Journal Article
Somatic mutations associated with MRI-derived volumetric features in glioblastoma
Gutman, David A., Dunn, William D., Grossmann, Patrick, Cooper, Lee A. D., Holder, Chad A., Ligon, Keith L., Alexander, Brian M., Aerts, Hugo J. W. L.
Published in Neuroradiology (01.12.2015)
Published in Neuroradiology (01.12.2015)
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Journal Article
Predicting cancer outcomes from histology and genomics using convolutional networks
Mobadersany, Pooya, Yousefi, Safoora, Amgad, Mohamed, Gutman, David A., Barnholtz-Sloan, Jill S., Vega, José E. Velázquez, Brat, Daniel J., Cooper, Lee A. D.
Published in Proceedings of the National Academy of Sciences - PNAS (27.03.2018)
Published in Proceedings of the National Academy of Sciences - PNAS (27.03.2018)
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Journal Article
MEDICI: Mining Essentiality Data to Identify Critical Interactions for Cancer Drug Target Discovery and Development
Harati, Sahar, Cooper, Lee A D, Moran, Josue D, Giuste, Felipe O, Du, Yuhong, Ivanov, Andrei A, Johns, Margaret A, Khuri, Fadlo R, Fu, Haian, Moreno, Carlos S
Published in PloS one (24.01.2017)
Published in PloS one (24.01.2017)
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Journal Article
Multi-faceted computational assessment of risk and progression in oligodendroglioma implicates NOTCH and PI3K pathways
Halani, Sameer H., Yousefi, Safoora, Velazquez Vega, Jose, Rossi, Michael R., Zhao, Zheng, Amrollahi, Fatemeh, Holder, Chad A., Baxter-Stoltzfus, Amelia, Eschbacher, Jennifer, Griffith, Brent, Olson, Jeffrey J., Jiang, Tao, Yates, Joseph R., Eberhart, Charles G., Poisson, Laila M., Cooper, Lee A. D., Brat, Daniel J.
Published in NPJ precision oncology (06.11.2018)
Published in NPJ precision oncology (06.11.2018)
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Journal Article
A population-level digital histologic biomarker for enhanced prognosis of invasive breast cancer
Amgad, Mohamed, Hodge, James M., Elsebaie, Maha A. T., Bodelon, Clara, Puvanesarajah, Samantha, Gutman, David A., Siziopikou, Kalliopi P., Goldstein, Jeffery A., Gaudet, Mia M., Teras, Lauren R., Cooper, Lee A. D.
Published in Nature medicine (2024)
Published in Nature medicine (2024)
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Journal Article
The OncoPPi network of cancer-focused protein–protein interactions to inform biological insights and therapeutic strategies
Li, Zenggang, Ivanov, Andrei A., Su, Rina, Gonzalez-Pecchi, Valentina, Qi, Qi, Liu, Songlin, Webber, Philip, McMillan, Elizabeth, Rusnak, Lauren, Pham, Cau, Chen, Xiaoqian, Mo, Xiulei, Revennaugh, Brian, Zhou, Wei, Marcus, Adam, Harati, Sahar, Chen, Xiang, Johns, Margaret A., White, Michael A., Moreno, Carlos S., Cooper, Lee A. D., Du, Yuhong, Khuri, Fadlo R., Fu, Haian
Published in Nature communications (16.02.2017)
Published in Nature communications (16.02.2017)
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Journal Article
A convolutional neural network to filter artifacts in spectroscopic MRI
Gurbani, Saumya S., Schreibmann, Eduard, Maudsley, Andrew A., Cordova, James Scott, Soher, Brian J., Poptani, Harish, Verma, Gaurav, Barker, Peter B., Shim, Hyunsuk, Cooper, Lee A. D.
Published in Magnetic resonance in medicine (01.11.2018)
Published in Magnetic resonance in medicine (01.11.2018)
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Journal Article
Integrative, Multimodal Analysis of Glioblastoma Using TCGA Molecular Data, Pathology Images, and Clinical Outcomes
Kong, Jun, Kurc, Tahsin M., Moreno, Carlos S., Saltz, Joel H., Brat, Daniel J., Cooper, Lee A. D., Wang, Fusheng, Gutman, David A., Gao, Jingjing, Chisolm, Candace, Sharma, Ashish, Pan, Tony, Van Meir, Erwin G.
Published in IEEE transactions on biomedical engineering (01.12.2011)
Published in IEEE transactions on biomedical engineering (01.12.2011)
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Journal Article
The Digital Slide Archive: A Software Platform for Management, Integration, and Analysis of Histology for Cancer Research
Gutman, David A, Khalilia, Mohammed, Lee, Sanghoon, Nalisnik, Michael, Mullen, Zach, Beezley, Jonathan, Chittajallu, Deepak R, Manthey, David, Cooper, Lee A D
Published in Cancer research (Chicago, Ill.) (01.11.2017)
Published in Cancer research (Chicago, Ill.) (01.11.2017)
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Journal Article
Cancer Digital Slide Archive: an informatics resource to support integrated in silico analysis of TCGA pathology data
Gutman, David A, Cobb, Jake, Somanna, Dhananjaya, Park, Yuna, Wang, Fusheng, Kurc, Tahsin, Saltz, Joel H, Brat, Daniel J, Cooper, Lee A D
Published in Journal of the American Medical Informatics Association : JAMIA (01.11.2013)
Published in Journal of the American Medical Informatics Association : JAMIA (01.11.2013)
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Journal Article
An Integrative Approach for In Silico Glioma Research
Cooper, Lee A. D., Flanders, Adam E., Rubin, Daniel L., Meir, Erwin G. Van, Kurc, Tahsin M., Moreno, Carlos S., Brat, Daniel J., Saltz, Joel H., Kong, Jun, Gutman, David A., Wang, Fusheng, Cholleti, Sharath R., Pan, Tony C., Widener, Patrick M., Sharma, Ashish, Mikkelsen, Tom
Published in IEEE transactions on biomedical engineering (01.10.2010)
Published in IEEE transactions on biomedical engineering (01.10.2010)
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Journal Article