Harmonization of cortical thickness measurements across scanners and sites
Fortin, Jean-Philippe, Cullen, Nicholas, Sheline, Yvette I., Taylor, Warren D., Aselcioglu, Irem, Cook, Philip A., Adams, Phil, Cooper, Crystal, Fava, Maurizio, McGrath, Patrick J., McInnis, Melvin, Phillips, Mary L., Trivedi, Madhukar H., Weissman, Myrna M., Shinohara, Russell T.
Published in NeuroImage (Orlando, Fla.) (15.02.2018)
Published in NeuroImage (Orlando, Fla.) (15.02.2018)
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Statistical harmonization corrects site effects in functional connectivity measurements from multi‐site fMRI data
Yu, Meichen, Linn, Kristin A., Cook, Philip A., Phillips, Mary L., McInnis, Melvin, Fava, Maurizio, Trivedi, Madhukar H., Weissman, Myrna M., Shinohara, Russell T., Sheline, Yvette I.
Published in Human brain mapping (01.11.2018)
Published in Human brain mapping (01.11.2018)
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Longitudinal ComBat: A method for harmonizing longitudinal multi-scanner imaging data
Beer, Joanne C., Tustison, Nicholas J., Cook, Philip A., Davatzikos, Christos, Sheline, Yvette I., Shinohara, Russell T., Linn, Kristin A.
Published in NeuroImage (Orlando, Fla.) (15.10.2020)
Published in NeuroImage (Orlando, Fla.) (15.10.2020)
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A reproducible evaluation of ANTs similarity metric performance in brain image registration
Avants, Brian B., Tustison, Nicholas J., Song, Gang, Cook, Philip A., Klein, Arno, Gee, James C.
Published in NeuroImage (Orlando, Fla.) (01.02.2011)
Published in NeuroImage (Orlando, Fla.) (01.02.2011)
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Mitigating head motion artifact in functional connectivity MRI
Ciric, Rastko, Rosen, Adon F. G., Erus, Guray, Cieslak, Matthew, Adebimpe, Azeez, Cook, Philip A., Bassett, Danielle S., Davatzikos, Christos, Wolf, Daniel H., Satterthwaite, Theodore D.
Published in Nature protocols (01.12.2018)
Published in Nature protocols (01.12.2018)
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Linked dimensions of psychopathology and connectivity in functional brain networks
Xia, Cedric Huchuan, Ma, Zongming, Ciric, Rastko, Gu, Shi, Betzel, Richard F., Kaczkurkin, Antonia N., Calkins, Monica E., Cook, Philip A., García de la Garza, Angel, Vandekar, Simon N., Cui, Zaixu, Moore, Tyler M., Roalf, David R., Ruparel, Kosha, Wolf, Daniel H., Davatzikos, Christos, Gur, Ruben C., Gur, Raquel E., Shinohara, Russell T., Bassett, Danielle S., Satterthwaite, Theodore D.
Published in Nature communications (01.08.2018)
Published in Nature communications (01.08.2018)
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Large-scale evaluation of ANTs and FreeSurfer cortical thickness measurements
Tustison, Nicholas J., Cook, Philip A., Klein, Arno, Song, Gang, Das, Sandhitsu R., Duda, Jeffrey T., Kandel, Benjamin M., van Strien, Niels, Stone, James R., Gee, James C., Avants, Brian B.
Published in NeuroImage (Orlando, Fla.) (01.10.2014)
Published in NeuroImage (Orlando, Fla.) (01.10.2014)
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Modular Segregation of Structural Brain Networks Supports the Development of Executive Function in Youth
Baum, Graham L., Ciric, Rastko, Roalf, David R., Betzel, Richard F., Moore, Tyler M., Shinohara, Russell T., Kahn, Ari E., Vandekar, Simon N., Rupert, Petra E., Quarmley, Megan, Cook, Philip A., Elliott, Mark A., Ruparel, Kosha, Gur, Raquel E., Gur, Ruben C., Bassett, Danielle S., Satterthwaite, Theodore D.
Published in Current biology (05.06.2017)
Published in Current biology (05.06.2017)
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Childhood trauma history is linked to abnormal brain connectivity in major depression
Yu, Meichen, Linn, Kristin A., Shinohara, Russell T., Oathes, Desmond J., Cook, Philip A., Duprat, Romain, Moore, Tyler M., Oquendo, Maria A., Phillips, Mary L., McInnis, Melvin, Fava, Maurizio, Trivedi, Madhukar H., McGrath, Patrick, Parsey, Ramin, Weissman, Myrna M., Sheline, Yvette I.
Published in Proceedings of the National Academy of Sciences - PNAS (23.04.2019)
Published in Proceedings of the National Academy of Sciences - PNAS (23.04.2019)
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The ANTsX ecosystem for quantitative biological and medical imaging
Tustison, Nicholas J., Cook, Philip A., Holbrook, Andrew J., Johnson, Hans J., Muschelli, John, Devenyi, Gabriel A., Duda, Jeffrey T., Das, Sandhitsu R., Cullen, Nicholas C., Gillen, Daniel L., Yassa, Michael A., Stone, James R., Gee, James C., Avants, Brian B.
Published in Scientific reports (27.04.2021)
Published in Scientific reports (27.04.2021)
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Evidence for Segregated and Integrative Connectivity Patterns in the Human Basal Ganglia
Draganski, Bogdan, Kherif, Ferath, Kloppel, Stefan, Cook, Philip A, Alexander, Daniel C, Parker, Geoff J. M, Deichmann, Ralf, Ashburner, John, Frackowiak, Richard S. J
Published in The Journal of neuroscience (09.07.2008)
Published in The Journal of neuroscience (09.07.2008)
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Transdiagnostic dimensions of psychopathology explain individuals’ unique deviations from normative neurodevelopment in brain structure
Parkes, Linden, Moore, Tyler M., Calkins, Monica E., Cook, Philip A., Cieslak, Matthew, Roalf, David R., Wolf, Daniel H., Gur, Ruben C., Gur, Raquel E., Satterthwaite, Theodore D., Bassett, Danielle S.
Published in Translational psychiatry (20.04.2021)
Published in Translational psychiatry (20.04.2021)
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Childhood socioeconomic status and childhood maltreatment: Distinct associations with brain structure
Lawson, Gwendolyn M, Camins, Joshua S, Wisse, Laura, Wu, Jue, Duda, Jeffrey T, Cook, Philip A, Gee, James C, Farah, Martha J
Published in PloS one (17.04.2017)
Published in PloS one (17.04.2017)
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Cognitive behavioral therapy increases amygdala connectivity with the cognitive control network in both MDD and PTSD
Shou, Haochang, Yang, Zhen, Satterthwaite, Theodore D, Cook, Philip A, Bruce, Steven E, Shinohara, Russell T, Rosenberg, Benjamin, Sheline, Yvette I
Published in NeuroImage clinical (01.01.2017)
Published in NeuroImage clinical (01.01.2017)
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ANTsX neuroimaging-derived structural phenotypes of UK Biobank
Tustison, Nicholas J., Yassa, Michael A., Rizvi, Batool, Cook, Philip A., Holbrook, Andrew J., Sathishkumar, Mithra T., Tustison, Mia G., Gee, James C., Stone, James R., Avants, Brian B.
Published in Scientific reports (17.04.2024)
Published in Scientific reports (17.04.2024)
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Leveraging multi-shell diffusion for studies of brain development in youth and young adulthood
Pines, Adam R., Cieslak, Matthew, Larsen, Bart, Baum, Graham L., Cook, Philip A., Adebimpe, Azeez, Dávila, Diego G., Elliott, Mark A., Jirsaraie, Robert, Murtha, Kristin, Oathes, Desmond J., Piiwaa, Kayla, Rosen, Adon F.G., Rush, Sage, Shinohara, Russell T., Bassett, Danielle S., Roalf, David R., Satterthwaite, Theodore D.
Published in Developmental cognitive neuroscience (01.06.2020)
Published in Developmental cognitive neuroscience (01.06.2020)
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Development of white matter fiber covariance networks supports executive function in youth
Bagautdinova, Joëlle, Bourque, Josiane, Sydnor, Valerie J., Cieslak, Matthew, Alexander-Bloch, Aaron F., Bertolero, Maxwell A., Cook, Philip A., Gur, Raquel E., Gur, Ruben C., Hu, Fengling, Larsen, Bart, Moore, Tyler M., Radhakrishnan, Hamsanandini, Roalf, David R., Shinohara, Russel T., Tapera, Tinashe M., Zhao, Chenying, Sotiras, Aristeidis, Davatzikos, Christos, Satterthwaite, Theodore D.
Published in Cell reports (Cambridge) (26.12.2023)
Published in Cell reports (Cambridge) (26.12.2023)
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Greater white matter degeneration and lower structural connectivity in non-amnestic vs. amnestic Alzheimer's disease
Phillips, Jeffrey S, Adluru, Nagesh, Chung, Moo K, Radhakrishnan, Hamsanandini, Olm, Christopher A, Cook, Philip A, Gee, James C, Cousins, Katheryn A Q, Arezoumandan, Sanaz, Wolk, David A, McMillan, Corey T, Grossman, Murray, Irwin, David J
Published in Frontiers in neuroscience (18.03.2024)
Published in Frontiers in neuroscience (18.03.2024)
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Boundary-based registration improves sensitivity for detecting hypoperfusion in sporadic frontotemporal lobar degeneration
Mihailescu, Sylvia, Hlava, Quinn, Cook, Philip A, Mandelli, Maria Luisa, Lee, Suzee E, Boeve, Bradley F, Dickerson, Bradford C, Gorno-Tempini, Maria Luisa, Rogalski, Emily, Grossman, Murray, Gee, James, McMillan, Corey T, Olm, Christopher A
Published in Frontiers in neurology (21.08.2024)
Published in Frontiers in neurology (21.08.2024)
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