CRISPR-Cas12a induced DNA double-strand breaks are repaired by multiple pathways with different mutation profiles in Magnaporthe oryzae
Huang, Jun, Rowe, David, Subedi, Pratima, Zhang, Wei, Suelter, Tyler, Valent, Barbara, Cook, David E
Published in Nature communications (22.11.2022)
Published in Nature communications (22.11.2022)
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Plant-necrotroph co-transcriptome networks illuminate a metabolic battlefield
Zhang, Wei, Corwin, Jason A, Copeland, Daniel Harrison, Feusier, Julie, Eshbaugh, Robert, Cook, David E, Atwell, Suzi, Kliebenstein, Daniel J
Published in eLife (13.05.2019)
Published in eLife (13.05.2019)
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Journal Article
Implications of the three-dimensional chromatin organization for genome evolution in a fungal plant pathogen
Torres, David E, Kramer, H Martin, Tracanna, Vittorio, Fiorin, Gabriel L, Cook, David E, Seidl, Michael F, Thomma, Bart P H J
Published in Nature communications (24.02.2024)
Published in Nature communications (24.02.2024)
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Journal Article
A unique chromatin profile defines adaptive genomic regions in a fungal plant pathogen
Cook, David E, Kramer, H Martin, Torres, David E, Seidl, Michael F, Thomma, Bart P H J
Published in eLife (18.12.2020)
Published in eLife (18.12.2020)
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Journal Article
Local Rather than Global H3K27me3 Dynamics Are Associated with Differential Gene Expression in Verticillium dahliae
Kramer, H Martin, Seidl, Michael F, Thomma, Bart P H J, Cook, David E
Published in mBio (22.02.2021)
Published in mBio (22.02.2021)
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RNAseq Analysis of Rhizomania-Infected Sugar Beet Provides the First Genome Sequence of Beet Necrotic Yellow Vein Virus from the USA and Identifies a Novel Alphanecrovirus and Putative Satellite Viruses
Weiland, John J, Sharma Poudel, Roshan, Flobinus, Alyssa, Cook, David E, Secor, Gary A, Bolton, Melvin D
Published in Viruses (10.06.2020)
Published in Viruses (10.06.2020)
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Journal Article
Three putative DNA methyltransferases of Verticillium dahliae differentially contribute to DNA methylation that is dispensable for growth, development and virulence
Kramer, H Martin, Cook, David E, van den Berg, Grardy C M, Seidl, Michael F, Thomma, Bart P H J
Published in Epigenetics & chromatin (03.05.2021)
Published in Epigenetics & chromatin (03.05.2021)
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Distinct Copy Number, Coding Sequence, and Locus Methylation Patterns Underlie Rhg1-Mediated Soybean Resistance to Soybean Cyst Nematode
Cook, David E., Bayless, Adam M., Wang, Kai, Guo, Xiaoli, Song, Qijian, Jiang, Jiming, Bent, Andrew F.
Published in Plant physiology (Bethesda) (01.06.2014)
Published in Plant physiology (Bethesda) (01.06.2014)
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Journal Article
Copy Number Variation of Multiple Genes at Rhg1 Mediates Nematode Resistance in Soybean
Cook, David E., Lee, Tong Geon, Guo, Xiaoli, Melito, Sara, Wang, Kai, Bayless, Adam M., Wang, Jianping, Hughes, Teresa J., Willis, David K., Clemente, Thomas E., Diers, Brian W., Jiang, Jiming, Hudson, Matthew E., Bent, Andrew F.
Published in Science (American Association for the Advancement of Science) (30.11.2012)
Published in Science (American Association for the Advancement of Science) (30.11.2012)
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Epigenetic regulation of nuclear processes in fungal plant pathogens
Kramer, H Martin, Cook, David E, Seidl, Michael F, Thomma, Bart P H J
Published in PLoS pathogens (03.08.2023)
Published in PLoS pathogens (03.08.2023)
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Journal Article
Mind the gap; seven reasons to close fragmented genome assemblies
Thomma, Bart P.H.J., Seidl, Michael F., Shi-Kunne, Xiaoqian, Cook, David E., Bolton, Melvin D., van Kan, Jan A.L., Faino, Luigi
Published in Fungal genetics and biology (01.05.2016)
Published in Fungal genetics and biology (01.05.2016)
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Journal Article
Targeting microbial pathogens
Thomma, Bart P H J, Cook, David E
Published in Science (American Association for the Advancement of Science) (08.06.2018)
Published in Science (American Association for the Advancement of Science) (08.06.2018)
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Journal Article
High dry matter whole-plant corn as a biomass feedstock
Cook, David E., Shinners, Kevin J., Weimer, Paul J., Muck, Richard E.
Published in Biomass & bioenergy (01.05.2014)
Published in Biomass & bioenergy (01.05.2014)
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