A reappraisal of how to build modular, reusable models of biological systems
Neal, Maxwell L, Cooling, Michael T, Smith, Lucian P, Thompson, Christopher T, Sauro, Herbert M, Carlson, Brian E, Cook, Daniel L, Gennari, John H
Published in PLoS computational biology (01.10.2014)
Published in PLoS computational biology (01.10.2014)
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Journal Article
Semantics-Based Composition of Integrated Cardiomyocyte Models Motivated by Real-World Use Cases
Neal, Maxwell L, Carlson, Brian E, Thompson, Christopher T, James, Ryan C, Kim, Karam G, Tran, Kenneth, Crampin, Edmund J, Cook, Daniel L, Gennari, John H
Published in PloS one (30.12.2015)
Published in PloS one (30.12.2015)
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Journal Article
Synaptic depression in the localization of sound
Spain, William J, Cook, Daniel L, Schwindt, Peter C, Grande, Lucinda A
Published in Nature (London) (02.01.2003)
Published in Nature (London) (02.01.2003)
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Journal Article
BaroFuse, a novel pressure-driven, adjustable-throughput perfusion system for tissue maintenance and assessment
Rountree, Austin, Karkamkar, Amit, Khalil, Gamal, Folch, Albert, Cook, Daniel L., Sweet, Ian R.
Published in Heliyon (01.12.2016)
Published in Heliyon (01.12.2016)
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Journal Article
Regulation of ATP/ADP in Pancreatic Islets
SWEET, Ian R, COOK, Daniel L, DEJULIO, Eric, WALLEN, Angela R, KHALIL, Gamal, CALLIS, James, REEMS, Joanna
Published in Diabetes (New York, N.Y.) (01.02.2004)
Published in Diabetes (New York, N.Y.) (01.02.2004)
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Journal Article
Modeling Stochastic Gene Expression: Implications for Haploinsufficiency
Cook, Daniel L., Gerber, Anthony N., Tapscott, Stephen J.
Published in Proceedings of the National Academy of Sciences - PNAS (22.12.1998)
Published in Proceedings of the National Academy of Sciences - PNAS (22.12.1998)
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Journal Article
Harmonizing semantic annotations for computational models in biology
Neal, Maxwell Lewis, König, Matthias, Nickerson, David, Mısırlı, Göksel, Kalbasi, Reza, Dräger, Andreas, Atalag, Koray, Chelliah, Vijayalakshmi, Cooling, Michael T, Cook, Daniel L, Crook, Sharon, de Alba, Miguel, Friedman, Samuel H, Garny, Alan, Gennari, John H, Gleeson, Padraig, Golebiewski, Martin, Hucka, Michael, Juty, Nick, Myers, Chris, Olivier, Brett G, Sauro, Herbert M, Scharm, Martin, Snoep, Jacky L, Touré, Vasundra, Wipat, Anil, Wolkenhauer, Olaf, Waltemath, Dagmar
Published in Briefings in bioinformatics (22.03.2019)
Published in Briefings in bioinformatics (22.03.2019)
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Journal Article
Multiple ontologies in action: Composite annotations for biosimulation models
Gennari, John H., Neal, Maxwell L., Galdzicki, Michal, Cook, Daniel L.
Published in Journal of biomedical informatics (01.02.2011)
Published in Journal of biomedical informatics (01.02.2011)
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Journal Article
Quantification of Low-Level Drug Effects Using Real-Time, in vitro Measurement of Oxygen Consumption Rate
Neal, Adam, Rountree, Austin M, Philips, Craig W, Kavanagh, Terrance J, Williams, Dominic P, Newham, Peter, Khalil, Gamal, Cook, Daniel L, Sweet, Ian R
Published in Toxicological sciences (01.12.2015)
Published in Toxicological sciences (01.12.2015)
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Journal Article
Integrating systems biology models and biomedical ontologies
Hoehndorf, Robert, Dumontier, Michel, Gennari, John H, Wimalaratne, Sarala, de Bono, Bernard, Cook, Daniel L, Gkoutos, Georgios V
Published in BMC systems biology (11.08.2011)
Published in BMC systems biology (11.08.2011)
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Journal Article
Systematic screening of potential β-cell imaging agents
Sweet, Ian R, Cook, Daniel L, Lernmark, Åke, Greenbaum, Carla J, Wallen, Angela R, Marcum, Erin S, Stekhova, Svetlana A, Krohn, Kenneth A
Published in Biochemical and biophysical research communications (20.02.2004)
Published in Biochemical and biophysical research communications (20.02.2004)
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Journal Article
Non-invasive imaging of beta cell mass: a quantitative analysis
Sweet, Ian R, Cook, Daniel L, Lernmark, Ake, Greenbaum, Carla J, Krohn, Kenneth A
Published in Diabetes technology & therapeutics (01.10.2004)
Published in Diabetes technology & therapeutics (01.10.2004)
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Journal Article
Representing physiological processes and their participants with PhysioMaps
Cook, Daniel L, Neal, Maxwell L, Hoehndorf, Robert, Gkoutos, Georgios V, Gennari, John H
Published in Journal of biomedical semantics (15.04.2013)
Published in Journal of biomedical semantics (15.04.2013)
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Journal Article
Bridging biological ontologies and biosimulation: the ontology of physics for biology
Cook, Daniel L, Mejino, Jose L V, Neal, Maxwell L, Gennari, John H
Published in AMIA ... Annual Symposium proceedings (06.11.2008)
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Published in AMIA ... Annual Symposium proceedings (06.11.2008)
Journal Article