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Optimized Analytical Procedures for the Untargeted Metabolomic Profiling of Human Urine and Plasma by Combining Hydrophilic Interaction (HILIC) and Reverse-Phase Liquid Chromatography (RPLC)–Mass Spectrometry[S]
Contrepois, Kévin, Jiang, Lihua, Snyder, Michael
Published in Molecular & cellular proteomics (01.06.2015)
Published in Molecular & cellular proteomics (01.06.2015)
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Personal aging markers and ageotypes revealed by deep longitudinal profiling
Ahadi, Sara, Zhou, Wenyu, Schüssler-Fiorenza Rose, Sophia Miryam, Sailani, M. Reza, Contrepois, Kévin, Avina, Monika, Ashland, Melanie, Brunet, Anne, Snyder, Michael
Published in Nature medicine (01.01.2020)
Published in Nature medicine (01.01.2020)
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Mass spectrometry-based metabolomics: a guide for annotation, quantification and best reporting practices
Alseekh, Saleh, Aharoni, Asaph, Brotman, Yariv, Contrepois, Kévin, D’Auria, John, Ewald, Jan, C. Ewald, Jennifer, Fraser, Paul D., Giavalisco, Patrick, Hall, Robert D., Heinemann, Matthias, Link, Hannes, Luo, Jie, Neumann, Steffen, Nielsen, Jens, Perez de Souza, Leonardo, Saito, Kazuki, Sauer, Uwe, Schroeder, Frank C., Schuster, Stefan, Siuzdak, Gary, Skirycz, Aleksandra, Sumner, Lloyd W., Snyder, Michael P., Tang, Huiru, Tohge, Takayuki, Wang, Yulan, Wen, Weiwei, Wu, Si, Xu, Guowang, Zamboni, Nicola, Fernie, Alisdair R.
Published in Nature methods (01.07.2021)
Published in Nature methods (01.07.2021)
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Metabolic Dynamics and Prediction of Gestational Age and Time to Delivery in Pregnant Women
Liang, Liang, Rasmussen, Marie-Louise Hee, Piening, Brian, Shen, Xiaotao, Chen, Songjie, Röst, Hannes, Snyder, John K., Tibshirani, Robert, Skotte, Line, Lee, Norman CY, Contrepois, Kévin, Feenstra, Bjarke, Zackriah, Hanyah, Snyder, Michael, Melbye, Mads
Published in Cell (25.06.2020)
Published in Cell (25.06.2020)
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Exercise plasma boosts memory and dampens brain inflammation via clusterin
De Miguel, Zurine, Khoury, Nathalie, Betley, Michael J., Lehallier, Benoit, Willoughby, Drew, Olsson, Niclas, Yang, Andrew C., Hahn, Oliver, Lu, Nannan, Vest, Ryan T., Bonanno, Liana N., Yerra, Lakshmi, Zhang, Lichao, Saw, Nay Lui, Fairchild, J. Kaci, Lee, Davis, Zhang, Hui, McAlpine, Patrick L., Contrepois, Kévin, Shamloo, Mehrdad, Elias, Joshua E., Rando, Thomas A., Wyss-Coray, Tony
Published in Nature (London) (16.12.2021)
Published in Nature (London) (16.12.2021)
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Longitudinal multi-omics of host–microbe dynamics in prediabetes
Zhou, Wenyu, Sailani, M. Reza, Contrepois, Kévin, Zhou, Yanjiao, Ahadi, Sara, Leopold, Shana R., Zhang, Martin J., Rao, Varsha, Avina, Monika, Mishra, Tejaswini, Johnson, Jethro, Lee-McMullen, Brittany, Chen, Songjie, Metwally, Ahmed A., Tran, Thi Dong Binh, Nguyen, Hoan, Zhou, Xin, Albright, Brandon, Hong, Bo-Young, Petersen, Lauren, Bautista, Eddy, Hanson, Blake, Chen, Lei, Spakowicz, Daniel, Bahmani, Amir, Salins, Denis, Leopold, Benjamin, Ashland, Melanie, Dagan-Rosenfeld, Orit, Rego, Shannon, Limcaoco, Patricia, Colbert, Elizabeth, Allister, Candice, Perelman, Dalia, Craig, Colleen, Wei, Eric, Chaib, Hassan, Hornburg, Daniel, Dunn, Jessilyn, Liang, Liang, Rose, Sophia Miryam Schüssler-Fiorenza, Kukurba, Kim, Piening, Brian, Rost, Hannes, Tse, David, McLaughlin, Tracey, Sodergren, Erica, Weinstock, George M., Snyder, Michael
Published in Nature (London) (01.05.2019)
Published in Nature (London) (01.05.2019)
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Altered Cardiac Energetics and Mitochondrial Dysfunction in Hypertrophic Cardiomyopathy
Ranjbarvaziri, Sara, Kooiker, Kristina B., Ellenberger, Mathew, Fajardo, Giovanni, Zhao, Mingming, Vander Roest, Alison Schroer, Woldeyes, Rahel A., Koyano, Tiffany T., Fong, Robyn, Ma, Ning, Tian, Lei, Traber, Gavin M., Chan, Frandics, Perrino, John, Reddy, Sushma, Chiu, Wah, Wu, Joseph C., Woo, Joseph Y., Ruppel, Kathleen M., Spudich, James A., Snyder, Michael P., Contrepois, Kévin, Bernstein, Daniel
Published in Circulation (New York, N.Y.) (23.11.2021)
Published in Circulation (New York, N.Y.) (23.11.2021)
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Global, distinctive, and personal changes in molecular and microbial profiles by specific fibers in humans
Lancaster, Samuel M., Lee-McMullen, Brittany, Abbott, Charles Wilbur, Quijada, Jeniffer V., Hornburg, Daniel, Park, Heyjun, Perelman, Dalia, Peterson, Dylan J., Tang, Michael, Robinson, Aaron, Ahadi, Sara, Contrepois, Kévin, Hung, Chia-Jui, Ashland, Melanie, McLaughlin, Tracey, Boonyanit, Anna, Horning, Aaron, Sonnenburg, Justin L., Snyder, Michael P.
Published in Cell host & microbe (08.06.2022)
Published in Cell host & microbe (08.06.2022)
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metID: an R package for automatable compound annotation for LC−MS-based data
Shen, Xiaotao, Wu, Si, Liang, Liang, Chen, Songjie, Contrepois, Kévin, Zhu, Zheng-Jiang, Snyder, Michael
Published in Bioinformatics (03.01.2022)
Published in Bioinformatics (03.01.2022)
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Multiomics modeling of the immunome, transcriptome, microbiome, proteome and metabolome adaptations during human pregnancy
Ghaemi, Mohammad Sajjad, DiGiulio, Daniel B, Contrepois, Kévin, Callahan, Benjamin, Ngo, Thuy T M, Lee-McMullen, Brittany, Lehallier, Benoit, Robaczewska, Anna, Mcilwain, David, Rosenberg-Hasson, Yael, Wong, Ronald J, Quaintance, Cecele, Culos, Anthony, Stanley, Natalie, Tanada, Athena, Tsai, Amy, Gaudilliere, Dyani, Ganio, Edward, Han, Xiaoyuan, Ando, Kazuo, McNeil, Leslie, Tingle, Martha, Wise, Paul, Maric, Ivana, Sirota, Marina, Wyss-Coray, Tony, Winn, Virginia D, Druzin, Maurice L, Gibbs, Ronald, Darmstadt, Gary L, Lewis, David B, Partovi Nia, Vahid, Agard, Bruno, Tibshirani, Robert, Nolan, Garry, Snyder, Michael P, Relman, David A, Quake, Stephen R, Shaw, Gary M, Stevenson, David K, Angst, Martin S, Gaudilliere, Brice, Aghaeepour, Nima
Published in Bioinformatics (01.01.2019)
Published in Bioinformatics (01.01.2019)
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Molecular Choreography of Acute Exercise
Contrepois, Kévin, Wu, Si, Moneghetti, Kegan J., Hornburg, Daniel, Ahadi, Sara, Tsai, Ming-Shian, Metwally, Ahmed A., Wei, Eric, Lee-McMullen, Brittany, Quijada, Jeniffer V., Chen, Songjie, Christle, Jeffrey W., Ellenberger, Mathew, Balliu, Brunilda, Taylor, Shalina, Durrant, Matthew G., Knowles, David A., Choudhry, Hani, Ashland, Melanie, Bahmani, Amir, Enslen, Brooke, Amsallem, Myriam, Kobayashi, Yukari, Avina, Monika, Perelman, Dalia, Schüssler-Fiorenza Rose, Sophia Miryam, Zhou, Wenyu, Ashley, Euan A., Montgomery, Stephen B., Chaib, Hassan, Haddad, Francois, Snyder, Michael P.
Published in Cell (28.05.2020)
Published in Cell (28.05.2020)
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Physiological blood–brain transport is impaired with age by a shift in transcytosis
Yang, Andrew C., Stevens, Marc Y., Chen, Michelle B., Lee, Davis P., Stähli, Daniel, Gate, David, Contrepois, Kévin, Chen, Winnie, Iram, Tal, Zhang, Lichao, Vest, Ryan T., Chaney, Aisling, Lehallier, Benoit, Olsson, Niclas, du Bois, Haley, Hsieh, Ryan, Cropper, Haley C., Berdnik, Daniela, Li, Lulin, Wang, Elizabeth Y., Traber, Gavin M., Bertozzi, Carolyn R., Luo, Jian, Snyder, Michael P., Elias, Joshua E., Quake, Stephen R., James, Michelle L., Wyss-Coray, Tony
Published in Nature (London) (16.07.2020)
Published in Nature (London) (16.07.2020)
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GLUT1 overexpression in CAR-T cells induces metabolic reprogramming and enhances potency
Guerrero, Justin A., Klysz, Dorota D., Chen, Yiyun, Malipatlolla, Meena, Lone, Jameel, Fowler, Carley, Stuani, Lucille, May, Audre, Bashti, Malek, Xu, Peng, Huang, Jing, Michael, Basil, Contrepois, Kévin, Dhingra, Shaurya, Fisher, Chris, Svensson, Katrin J., Davis, Kara L., Kasowski, Maya, Feldman, Steven A., Sotillo, Elena, Mackall, Crystal L.
Published in Nature communications (06.10.2024)
Published in Nature communications (06.10.2024)
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Cross-Laboratory Standardization of Preclinical Lipidomics Using Differential Mobility Spectrometry and Multiple Reaction Monitoring
Ghorasaini, Mohan, Mohammed, Yassene, Adamski, Jerzy, Bettcher, Lisa, Bowden, John A, Cabruja, Matias, Contrepois, Kévin, Ellenberger, Mathew, Gajera, Bharat, Haid, Mark, Hornburg, Daniel, Hunter, Christie, Jones, Christina M, Klein, Theo, Mayboroda, Oleg, Mirzaian, Mina, Moaddel, Ruin, Ferrucci, Luigi, Lovett, Jacqueline, Nazir, Kenneth, Pearson, Mackenzie, Ubhi, Baljit K, Raftery, Daniel, Riols, Fabien, Sayers, Rebekah, Sijbrands, Eric J. G, Snyder, Michael P, Su, Baolong, Velagapudi, Vidya, Williams, Kevin J, de Rijke, Yolanda B, Giera, Martin
Published in Analytical chemistry (Washington) (14.12.2021)
Published in Analytical chemistry (Washington) (14.12.2021)
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ALDH1A3 Coordinates Metabolism With Gene Regulation in Pulmonary Arterial Hypertension
Li, Dan, Shao, Ning-Yi, Moonen, Jan-Renier, Zhao, Zhixin, Shi, Minyi, Otsuki, Shoichiro, Wang, Lingli, Nguyen, Tiffany, Yan, Elaine, Marciano, David P., Contrepois, Kévin, Li, Caiyun G., Wu, Joseph C., Snyder, Michael P., Rabinovitch, Marlene
Published in Circulation (New York, N.Y.) (25.05.2021)
Published in Circulation (New York, N.Y.) (25.05.2021)
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Multi-omic profiling of primary mouse neutrophils predicts a pattern of sex- and age-related functional regulation
Lu, Ryan J., Taylor, Shalina, Contrepois, Kévin, Kim, Minhoo, Bravo, Juan I., Ellenberger, Mathew, Sampathkumar, Nirmal K., Benayoun, Bérénice A.
Published in Nature aging (01.08.2021)
Published in Nature aging (01.08.2021)
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A scalable, secure, and interoperable platform for deep data-driven health management
Bahmani, Amir, Alavi, Arash, Buergel, Thore, Upadhyayula, Sushil, Wang, Qiwen, Ananthakrishnan, Srinath Krishna, Alavi, Amir, Celis, Diego, Gillespie, Dan, Young, Gregory, Xing, Ziye, Nguyen, Minh Hoang Huynh, Haque, Audrey, Mathur, Ankit, Payne, Josh, Mazaheri, Ghazal, Li, Jason Kenichi, Kotipalli, Pramod, Liao, Lisa, Bhasin, Rajat, Cha, Kexin, Rolnik, Benjamin, Celli, Alessandra, Dagan-Rosenfeld, Orit, Higgs, Emily, Zhou, Wenyu, Berry, Camille Lauren, Van Winkle, Katherine Grace, Contrepois, Kévin, Ray, Utsab, Bettinger, Keith, Datta, Somalee, Li, Xiao, Snyder, Michael P.
Published in Nature communications (01.10.2021)
Published in Nature communications (01.10.2021)
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Systematic Identification of Regulators of Oxidative Stress Reveals Non-canonical Roles for Peroxisomal Import and the Pentose Phosphate Pathway
Dubreuil, Michael M., Morgens, David W., Okumoto, Kanji, Honsho, Masanori, Contrepois, Kévin, Lee-McMullen, Brittany, Traber, Gavin McAllister, Sood, Ria S., Dixon, Scott J., Snyder, Michael P., Fujiki, Yukio, Bassik, Michael C.
Published in Cell reports (Cambridge) (04.02.2020)
Published in Cell reports (Cambridge) (04.02.2020)
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Evolution of diapause in the African turquoise killifish by remodeling the ancient gene regulatory landscape
Singh, Param Priya, Reeves, G. Adam, Contrepois, Kévin, Papsdorf, Katharina, Miklas, Jason W., Ellenberger, Mathew, Hu, Chi-Kuo, Snyder, Michael P., Brunet, Anne
Published in Cell (20.06.2024)
Published in Cell (20.06.2024)
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Untargeted metabolomic profiling in children identifies novel pathways in asthma and atopy
Lejeune, Stéphanie, Kaushik, Abhinav, Parsons, Ella S., Chinthrajah, Sharon, Snyder, Michael, Desai, Manisha, Manohar, Monali, Prunicki, Mary, Contrepois, Kévin, Gosset, Philippe, Deschildre, Antoine, Nadeau, Kari
Published in Journal of allergy and clinical immunology (01.02.2024)
Published in Journal of allergy and clinical immunology (01.02.2024)
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