Gene regulation in time and space during X-chromosome inactivation
Loda, Agnese, Collombet, Samuel, Heard, Edith
Published in Nature reviews. Molecular cell biology (01.04.2022)
Published in Nature reviews. Molecular cell biology (01.04.2022)
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Journal Article
Parental-to-embryo switch of chromosome organization in early embryogenesis
Collombet, Samuel, Ranisavljevic, Noémie, Nagano, Takashi, Varnai, Csilla, Shisode, Tarak, Leung, Wing, Piolot, Tristan, Galupa, Rafael, Borensztein, Maud, Servant, Nicolas, Fraser, Peter, Ancelin, Katia, Heard, Edith
Published in Nature (London) (01.04.2020)
Published in Nature (London) (01.04.2020)
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Journal Article
Transcription factors orchestrate dynamic interplay between genome topology and gene regulation during cell reprogramming
Stadhouders, Ralph, Vidal, Enrique, Serra, François, Di Stefano, Bruno, Le Dily, François, Quilez, Javier, Gomez, Antonio, Collombet, Samuel, Berenguer, Clara, Cuartero, Yasmina, Hecht, Jochen, Filion, Guillaume J, Beato, Miguel, Marti-Renom, Marc A, Graf, Thomas
Published in Nature genetics (01.02.2018)
Published in Nature genetics (01.02.2018)
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Journal Article
SPEN integrates transcriptional and epigenetic control of X-inactivation
Dossin, François, Pinheiro, Inês, Żylicz, Jan J, Roensch, Julia, Collombet, Samuel, Le Saux, Agnès, Chelmicki, Tomasz, Attia, Mikaël, Kapoor, Varun, Zhan, Ye, Dingli, Florent, Loew, Damarys, Mercher, Thomas, Dekker, Job, Heard, Edith
Published in Nature (London) (20.02.2020)
Published in Nature (London) (20.02.2020)
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Journal Article
Transcription Factors Drive Tet2-Mediated Enhancer Demethylation to Reprogram Cell Fate
Sardina, Jose Luis, Collombet, Samuel, Tian, Tian V., Gómez, Antonio, Di Stefano, Bruno, Berenguer, Clara, Brumbaugh, Justin, Stadhouders, Ralph, Segura-Morales, Carolina, Gut, Marta, Gut, Ivo G., Heath, Simon, Aranda, Sergi, Di Croce, Luciano, Hochedlinger, Konrad, Thieffry, Denis, Graf, Thomas
Published in Cell stem cell (01.11.2018)
Published in Cell stem cell (01.11.2018)
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Journal Article
Dynamic reversal of random X-Chromosome inactivation during iPSC reprogramming
Janiszewski, Adrian, Talon, Irene, Chappell, Joel, Collombet, Samuel, Song, Juan, De Geest, Natalie, To, San Kit, Bervoets, Greet, Marin-Bejar, Oskar, Provenzano, Caterina, Vanheer, Lotte, Marine, Jean-Christophe, Rambow, Florian, Pasque, Vincent
Published in Genome research (01.10.2019)
Published in Genome research (01.10.2019)
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Journal Article
Transcription Factors Drive Tet2-Mediated Enhancer Demethylation to Reprogram Cell Fate
Sardina, Jose Luis, Collombet, Samuel, Tian, Tian V., Gómez, Antonio, Di Stefano, Bruno, Berenguer, Clara, Brumbaugh, Justin, Stadhouders, Ralph, Segura-Morales, Carolina, Gut, Marta, Gut, Ivo G., Heath, Simon, Aranda, Sergi, Di Croce, Luciano, Hochedlinger, Konrad, Thieffry, Denis, Graf, Thomas
Published in Cell stem cell (06.12.2018)
Published in Cell stem cell (06.12.2018)
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Journal Article
Cooperation, cis-interactions, versatility and evolutionary plasticity of multiple cis-acting elements underlie krox20 hindbrain regulation
Torbey, Patrick, Thierion, Elodie, Collombet, Samuel, de Cian, Anne, Desmarquet-Trin-Dinh, Carole, Dura, Mathilde, Concordet, Jean-Paul, Charnay, Patrick, Gilardi-Hebenstreit, Pascale
Published in PLoS genetics (06.08.2018)
Published in PLoS genetics (06.08.2018)
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Journal Article
C/EBPα Activates Pre-existing and De Novo Macrophage Enhancers during Induced Pre-B Cell Transdifferentiation and Myelopoiesis
van Oevelen, Chris, Collombet, Samuel, Vicent, Guillermo, Hoogenkamp, Maarten, Lepoivre, Cyrille, Badeaux, Aimee, Bussmann, Lars, Sardina, Jose Luis, Thieffry, Denis, Beato, Miguel, Shi, Yang, Bonifer, Constanze, Graf, Thomas
Published in Stem cell reports (11.08.2015)
Published in Stem cell reports (11.08.2015)
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Journal Article
Constitutively Active SMAD2/3 Are Broad-Scope Potentiators of Transcription-Factor-Mediated Cellular Reprogramming
Ruetz, Tyson, Pfisterer, Ulrich, Di Stefano, Bruno, Ashmore, James, Beniazza, Meryam, Tian, Tian V., Kaemena, Daniel F., Tosti, Luca, Tan, Wenfang, Manning, Jonathan R., Chantzoura, Eleni, Ottosson, Daniella Rylander, Collombet, Samuel, Johnsson, Anna, Cohen, Erez, Yusa, Kosuke, Linnarsson, Sten, Graf, Thomas, Parmar, Malin, Kaji, Keisuke
Published in Cell stem cell (07.12.2017)
Published in Cell stem cell (07.12.2017)
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Journal Article
Krox20 hindbrain regulation incorporates multiple modes of cooperation between cis-acting elements
Thierion, Elodie, Le Men, Johan, Collombet, Samuel, Hernandez, Céline, Coulpier, Fanny, Torbey, Patrick, Thomas-Chollier, Morgane, Noordermeer, Daan, Charnay, Patrick, Gilardi-Hebenstreit, Pascale
Published in PLoS genetics (27.07.2017)
Published in PLoS genetics (27.07.2017)
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Journal Article
RSAT 2018: regulatory sequence analysis tools 20th anniversary
Nguyen, Nga Thi Thuy, Contreras-Moreira, Bruno, Castro-Mondragon, Jaime A, Santana-Garcia, Walter, Ossio, Raul, Robles-Espinoza, Carla Daniela, Bahin, Mathieu, Collombet, Samuel, Vincens, Pierre, Thieffry, Denis, van Helden, Jacques, Medina-Rivera, Alejandra, Thomas-Chollier, Morgane
Published in Nucleic acids research (02.07.2018)
Published in Nucleic acids research (02.07.2018)
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Journal Article
RNA polymerase II depletion from the inactive X chromosome territory is not mediated by physical compartmentalization
Collombet, Samuel, Rall, Isabell, Dugast-Darzacq, Claire, Heckert, Alec, Halavatyi, Aliaksandr, Le Saux, Agnes, Dailey, Gina, Darzacq, Xavier, Heard, Edith
Published in Nature structural & molecular biology (01.08.2023)
Published in Nature structural & molecular biology (01.08.2023)
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Journal Article
RSAT 2018: regulatory sequence analysis tools 20th anniversary
Nguyen, Nga Thi Thuy, Contreras-Moreira, Bruno, Castro-Mondragon, Jaime A, Santana-Garcia, Walter, Ossio, Raul, Robles-Espinoza, Carla Daniela, Bahin, Mathieu, Collombet, Samuel, Vincens, Pierre, Thieffry, Denis, van Helden, Jacques, Medina-Rivera, Alejandra, Thomas-Chollier, Morgane
Published in Nucleic acids research (02.07.2018)
Published in Nucleic acids research (02.07.2018)
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Journal Article
Logical modeling of lymphoid and myeloid cell specification and transdifferentiation
Collombet, Samuel, van Oevelen, Chris, Ortega, Jose Luis Sardina, Abou-Jaoudé, Wassim, Di Stefano, Bruno, Thomas-Chollier, Morgane, Graf, Thomas, Thieffry, Denis
Published in Proceedings of the National Academy of Sciences - PNAS (06.06.2017)
Published in Proceedings of the National Academy of Sciences - PNAS (06.06.2017)
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Journal Article
C/EBPα poises B cells for rapid reprogramming into induced pluripotent stem cells
Di Stefano, Bruno, Sardina, Jose Luis, van Oevelen, Chris, Collombet, Samuel, Kallin, Eric M, Vicent, Guillermo P, Lu, Jun, Thieffry, Denis, Beato, Miguel, Graf, Thomas
Published in Nature (London) (13.02.2014)
Published in Nature (London) (13.02.2014)
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Journal Article
C/EBPα creates elite cells for iPSC reprogramming by upregulating Klf4 and increasing the levels of Lsd1 and Brd4
Di Stefano, Bruno, Collombet, Samuel, Jakobsen, Janus Schou, Wierer, Michael, Sardina, Jose Luis, Lackner, Andreas, Stadhouders, Ralph, Segura-Morales, Carolina, Francesconi, Mirko, Limone, Francesco, Mann, Matthias, Porse, Bo, Thieffry, Denis, Graf, Thomas
Published in Nature cell biology (01.04.2016)
Published in Nature cell biology (01.04.2016)
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Journal Article
A Transcription Factor Pulse Can Prime Chromatin for Heritable Transcriptional Memory
Iberg-Badeaux, Aimee, Collombet, Samuel, Laurent, Benoit, van Oevelen, Chris, Chin, Kuo-Kai, Thieffry, Denis, Graf, Thomas, Shi, Yang
Published in Molecular and cellular biology (01.02.2017)
Published in Molecular and cellular biology (01.02.2017)
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