Long-range interactions between topologically associating domains shape the four-dimensional genome during differentiation
Paulsen, Jonas, Liyakat Ali, Tharvesh M., Nekrasov, Maxim, Delbarre, Erwan, Baudement, Marie-Odile, Kurscheid, Sebastian, Tremethick, David, Collas, Philippe
Published in Nature genetics (01.05.2019)
Published in Nature genetics (01.05.2019)
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Chrom3D: three-dimensional genome modeling from Hi-C and nuclear lamin-genome contacts
Paulsen, Jonas, Sekelja, Monika, Oldenburg, Anja R, Barateau, Alice, Briand, Nolwenn, Delbarre, Erwan, Shah, Akshay, Sørensen, Anita L, Vigouroux, Corinne, Buendia, Brigitte, Collas, Philippe
Published in Genome Biology (30.01.2017)
Published in Genome Biology (30.01.2017)
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Browning of white adipose cells by intermediate metabolites: an adaptive mechanism to alleviate redox pressure
Carrière, Audrey, Jeanson, Yannick, Berger-Müller, Sandra, André, Mireille, Chenouard, Vanessa, Arnaud, Emmanuelle, Barreau, Corinne, Walther, Romy, Galinier, Anne, Wdziekonski, Brigitte, Villageois, Phi, Louche, Katie, Collas, Philippe, Moro, Cédric, Dani, Christian, Villarroya, Francesc, Casteilla, Louis
Published in Diabetes (New York, N.Y.) (01.10.2014)
Published in Diabetes (New York, N.Y.) (01.10.2014)
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Manifold Based Optimization for Single-Cell 3D Genome Reconstruction
Paulsen, Jonas, Gramstad, Odin, Collas, Philippe
Published in PLoS computational biology (01.08.2015)
Published in PLoS computational biology (01.08.2015)
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Journal Article
Unrestrained ESCRT-III drives micronuclear catastrophe and chromosome fragmentation
Vietri, Marina, Schultz, Sebastian W., Bellanger, Aurélie, Jones, Carl M., Petersen, Louise I., Raiborg, Camilla, Skarpen, Ellen, Pedurupillay, Christeen Ramane J., Kjos, Ingrid, Kip, Eline, Timmer, Romy, Jain, Ashish, Collas, Philippe, Knorr, Roland L., Grellscheid, Sushma N., Kusumaatmaja, Halim, Brech, Andreas, Micci, Francesca, Stenmark, Harald, Campsteijn, Coen
Published in Nature cell biology (01.07.2020)
Published in Nature cell biology (01.07.2020)
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Journal Article
Cohesin facilitates zygotic genome activation in zebrafish
Meier, Michael, Grant, Jenny, Dowdle, Amy, Thomas, Amarni, Gerton, Jennifer, Collas, Philippe, O'Sullivan, Justin M, Horsfield, Julia A
Published in Development (Cambridge) (01.01.2018)
Published in Development (Cambridge) (01.01.2018)
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Journal Article
Lamin A/C-promoter interactions specify chromatin state-dependent transcription outcomes
Lund, Eivind, Oldenburg, Anja R, Delbarre, Erwan, Freberg, Christel T, Duband-Goulet, Isabelle, Eskeland, Ragnhild, Buendia, Brigitte, Collas, Philippe
Published in Genome research (01.10.2013)
Published in Genome research (01.10.2013)
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Journal Article
Ribosomal DNA copy loss and repeat instability in ATRX-mutated cancers
Udugama, Maheshi, Sanij, Elaine, Voon, Hsiao P. J., Son, Jinbae, Hii, Linda, Henson, Jeremy D., Chan, F. Lyn, Chang, Fiona T. M., Liu, Yumei, Pearson, Richard B., Kalitsis, Paul, Mann, Jeffrey R., Collas, Philippe, Hannan, Ross D., Wong, Lee H.
Published in Proceedings of the National Academy of Sciences - PNAS (01.05.2018)
Published in Proceedings of the National Academy of Sciences - PNAS (01.05.2018)
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Journal Article
TAD cliques predict key features of chromatin organization
Liyakat Ali, Tharvesh M, Brunet, Annaël, Collas, Philippe, Paulsen, Jonas
Published in BMC genomics (03.07.2021)
Published in BMC genomics (03.07.2021)
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