Differential abundance analysis for microbial marker-gene surveys
Paulson, Joseph N, Stine, O Colin, Bravo, Héctor Corrada, Pop, Mihai
Published in Nature methods (01.12.2013)
Published in Nature methods (01.12.2013)
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Journal Article
Deep sequencing of the oral microbiome reveals signatures of periodontal disease
Liu, Bo, Faller, Lina L, Klitgord, Niels, Mazumdar, Varun, Ghodsi, Mohammad, Sommer, Daniel D, Gibbons, Theodore R, Treangen, Todd J, Chang, Yi-Chien, Li, Shan, Stine, O Colin, Hasturk, Hatice, Kasif, Simon, Segrè, Daniel, Pop, Mihai, Amar, Salomon
Published in PloS one (04.06.2012)
Published in PloS one (04.06.2012)
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Journal Article
Contrasting Epidemiology of Cholera in Bangladesh and Africa
Sack, David A, Debes, Amanda K, Ateudjieu, Jerome, Bwire, Godfrey, Ali, Mohammad, Ngwa, Moise Chi, Mwaba, John, Chilengi, Roma, Orach, Christopher C, Boru, Waqo, Mohamed, Ahmed Abade, Ram, Malathi, George, Christine Marie, Stine, O Colin
Published in The Journal of infectious diseases (20.12.2021)
Published in The Journal of infectious diseases (20.12.2021)
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Journal Article
Reclassification of Bacteriovorax marinus as Halobacteriovorax marinus gen. nov., comb. nov. and Bacteriovorax litoralis as Halobacteriovorax litoralis comb. nov.; description of Halobacteriovoraceae fam. nov. in the class Deltaproteobacteria
Koval, Susan F, Williams, Henry N, Stine, O. Colin
Published in International journal of systematic and evolutionary microbiology (01.02.2015)
Published in International journal of systematic and evolutionary microbiology (01.02.2015)
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Journal Article
Return of Chloroquine-Susceptible Falciparum Malaria in Malawi Was a Reexpansion of Diverse Susceptible Parasites
Laufer, Miriam K., Takala-Harrison, Shannon, Dzinjalamala, Fraction K., Stine, O. Colin, Taylor, Terrie E., Plowe, Christopher V.
Published in The Journal of infectious diseases (01.09.2010)
Published in The Journal of infectious diseases (01.09.2010)
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Journal Article
Backward compatibility of whole genome sequencing data with MLVA typing using a new MLVAtype shiny application for Vibrio cholerae
Ambroise, Jérôme, Irenge, Léonid M, Durant, Jean-François, Bearzatto, Bertrand, Bwire, Godfrey, Stine, O Colin, Gala, Jean-Luc
Published in PloS one (11.12.2019)
Published in PloS one (11.12.2019)
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Journal Article
Akkermansia muciniphila Associated with Improved Linear Growth among Young Children, Democratic Republic of the Congo
George, Christine Marie, Birindwa, Alves, Li, Shan, Williams, Camille, Kuhl, Jennifer, Thomas, Elizabeth, François, Ruthly, Presence, Amani Sanvura, Claude, Bisimwa Rusanga Jean, Mirindi, Patrick, Bisimwa, Lucien, Perin, Jamie, Stine, O Colin
Published in Emerging infectious diseases (01.01.2023)
Published in Emerging infectious diseases (01.01.2023)
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Journal Article
Effects of Lyse-It on endonuclease fragmentation, function and activity
Santaus, Tonya M, Zhang, Fan, Li, Shan, Stine, O Colin, Geddes, Chris D
Published in PloS one (30.09.2019)
Published in PloS one (30.09.2019)
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Journal Article
Redefining enteroaggregative Escherichia coli (EAEC): Genomic characterization of epidemiological EAEC strains
Boisen, Nadia, Østerlund, Mark T, Joensen, Katrine G, Santiago, Araceli E, Mandomando, Inacio, Cravioto, Alejandro, Chattaway, Marie A, Gonyar, Laura A, Overballe-Petersen, Søren, Stine, O Colin, Rasko, David A, Scheutz, Flemming, Nataro, James P
Published in PLoS neglected tropical diseases (01.09.2020)
Published in PLoS neglected tropical diseases (01.09.2020)
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Journal Article
Comparative genomic analysis of Vibrio parahaemolyticus: serotype conversion and virulence
Chen, Yuansha, Stine, O Colin, Badger, Jonathan H, Gil, Ana I, Nair, G Balakrish, Nishibuchi, Mitsuaki, Fouts, Derrick E
Published in BMC genomics (06.06.2011)
Published in BMC genomics (06.06.2011)
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Journal Article
Molecular characterization of Vibrio cholerae responsible for cholera epidemics in Uganda by PCR, MLVA and WGS
Bwire, Godfrey, Sack, David A, Almeida, Mathieu, Li, Shan, Voeglein, Joseph B, Debes, Amanda Kay, Kagirita, Atek, Buyinza, Ambrose Wabwire, Orach, Christopher Garimoi, Stine, O Colin
Published in PLoS neglected tropical diseases (01.06.2018)
Published in PLoS neglected tropical diseases (01.06.2018)
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Journal Article
Quantitative PCR for Detection of Shigella Improves Ascertainment of Shigella Burden in Children with Moderate-to-Severe Diarrhea in Low-Income Countries
Lindsay, Brianna, Ochieng, John B, Ikumapayi, Usman N, Toure, Aliou, Ahmed, Dilruba, Li, Shan, Panchalingam, Sandra, Levine, Myron M, Kotloff, Karen, Rasko, David A, Morris, Carolyn R, Juma, Jane, Fields, Barry S, Dione, Michel, Malle, Dramane, Becker, Stephen M, Houpt, Eric R, Nataro, James P, Sommerfelt, Halvor, Pop, Mihai, Oundo, Joe, Antonio, Martin, Hossain, Anowar, Tamboura, Boubou, Stine, O Colin
Published in Journal of Clinical Microbiology (01.06.2013)
Published in Journal of Clinical Microbiology (01.06.2013)
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Journal Article
Targeted gown and glove use to prevent Staphylococcus aureus acquisition in community-based nursing homes: A pilot study
Lydecker, Alison D, Osei, Patience A, Pineles, Lisa, Johnson, J Kristie, Meisel, Jacquelyn, Stine, O Colin, Magder, Laurence, Gurses, Ayse P, Hebden, Joan, Oruc, Cagla, Mody, Lona, Jacobs Slifka, Kara, Stone, Nimalie D, Roghmann, Mary-Claire
Published in Infection control and hospital epidemiology (01.04.2021)
Published in Infection control and hospital epidemiology (01.04.2021)
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Journal Article
Recent clonal origin of cholera in Haiti
Ali, Afsar, Chen, Yuansha, Johnson, Judith A, Redden, Edsel, Mayette, Yfto, Rashid, Mohammed H, Stine, O Colin, Morris, Jr, J Glenn
Published in Emerging infectious diseases (01.04.2011)
Published in Emerging infectious diseases (01.04.2011)
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Journal Article
Rapid sample preparation with Lyse-It® for Listeria monocytogenes and Vibrio cholerae
Santaus, Tonya M, Li, Shan, Ladd, Paula, Harvey, Amanda, Cole, Shannon, Stine, O Colin, Geddes, Chris D
Published in PloS one (25.07.2018)
Published in PloS one (25.07.2018)
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Journal Article
Identification of Coli Surface Antigen 23, a Novel Adhesin of Enterotoxigenic Escherichia coli
DEL CANTO, Felipe, BOTKIN, Douglas J, VIDAL, Roberto, VALENZUELA, Patricio, POPOV, Vsevolod, RUIZ-PEREZ, Fernando, NATARO, James P, LEVINE, Myron M, COLIN STINE, O, POP, Mihai, TORRES, Alfredo G
Published in Infection and Immunity (01.08.2012)
Published in Infection and Immunity (01.08.2012)
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Journal Article
Genetic Diversity of O-Antigen Biosynthesis Regions in Vibrio cholerae
AYDANIAN, Antonina, LI TANG, GLENN MORRIS, J, JOHNSON, Judith A, COLIN STINE, O
Published in Applied and Environmental Microbiology (01.04.2011)
Published in Applied and Environmental Microbiology (01.04.2011)
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Journal Article
Three transmission events of Vibrio cholerae O1 into Lusaka, Zambia
Mwaba, John, Debes, Amanda K, Murt, Kelsey N, Shea, Patrick, Simuyandi, Michelo, Laban, Natasha, Kazimbaya, Katayi, Chisenga, Caroline, Li, Shan, Almeida, Mathieu, Meisel, Jacquelyn S, Shibemba, Aaron, Kantenga, Timothy, Mukonka, Victor, Kwenda, Geoffrey, Sack, David A, Chilengi, Roma, Stine, O Colin
Published in BMC infectious diseases (14.06.2021)
Published in BMC infectious diseases (14.06.2021)
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Journal Article