Unique, dual-indexed sequencing adapters with UMIs effectively eliminate index cross-talk and significantly improve sensitivity of massively parallel sequencing
MacConaill, Laura E, Burns, Robert T, Nag, Anwesha, Coleman, Haley A, Slevin, Michael K, Giorda, Kristina, Light, Madelyn, Lai, Kevin, Jarosz, Mirna, McNeill, Matthew S, Ducar, Matthew D, Meyerson, Matthew, Thorner, Aaron R
Published in BMC genomics (08.01.2018)
Published in BMC genomics (08.01.2018)
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Neuropeptidergic signaling partitions arousal behaviors in zebrafish
Woods, Ian G, Schoppik, David, Shi, Veronica J, Zimmerman, Steven, Coleman, Haley A, Greenwood, Joel, Soucy, Edward R, Schier, Alexander F
Published in The Journal of neuroscience (26.02.2014)
Published in The Journal of neuroscience (26.02.2014)
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Abstract 3644: Optimization of library construction for massively parallel sequencing using low-input, FFPE-derived DNA without additional PCR amplification
Thorner, Aaron R., Ziaugra, Liuda, Ducar, Matthew D., Lin, Ling, Laing, Angelica, Coleman, Haley A., McShane, Suzanne R., Clapp, Andrea, Paquette, Rachel R., Wollison, Bruce M., Hoeftberger, Johann, Patel, Neil A., Hunter, Samuel S., Manam, Monica D., MacConaill, Laura E., Hahn, William C., Meyerson, Matthew L., van Hummelen, Paul
Published in Cancer research (Chicago, Ill.) (15.07.2016)
Published in Cancer research (Chicago, Ill.) (15.07.2016)
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Genomic Heterogeneity as a Barrier to Precision Medicine in Gastroesophageal Adenocarcinoma
Pectasides, Eirini, Stachler, Matthew D, Derks, Sarah, Liu, Yang, Maron, Steven, Islam, Mirazul, Alpert, Lindsay, Kwak, Heewon, Kindler, Hedy, Polite, Blase, Sharma, Manish R, Allen, Kenisha, O'Day, Emily, Lomnicki, Samantha, Maranto, Melissa, Kanteti, Rajani, Fitzpatrick, Carrie, Weber, Christopher, Setia, Namrata, Xiao, Shu-Yuan, Hart, John, Nagy, Rebecca J, Kim, Kyoung-Mee, Choi, Min-Gew, Min, Byung-Hoon, Nason, Katie S, O'Keefe, Lea, Watanabe, Masayuki, Baba, Hideo, Lanman, Rick, Agoston, Agoston T, Oh, David J, Dunford, Andrew, Thorner, Aaron R, Ducar, Matthew D, Wollison, Bruce M, Coleman, Haley A, Ji, Yuan, Posner, Mitchell C, Roggin, Kevin, Turaga, Kiran, Chang, Paul, Hogarth, Kyle, Siddiqui, Uzma, Gelrud, Andres, Ha, Gavin, Freeman, Samuel S, Rhoades, Justin, Reed, Sarah, Gydush, Greg, Rotem, Denisse, Davison, Jon, Imamura, Yu, Adalsteinsson, Viktor, Lee, Jeeyun, Bass, Adam J, Catenacci, Daniel V
Published in Cancer discovery (01.01.2018)
Published in Cancer discovery (01.01.2018)
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Abstract 3417: Detection and analysis of oncovirus integration sites in FFPE-derived human tumor samples using hybrid capture and massively parallel sequencing
Slevin, Michael K., Powers, Winslow T., Burns, Robert T., Wollison, Bruce M., Coleman, Haley A., Paskavitz, Amanda L., Nag, Anwesha, Manning, Danielle K., Garcia, Elizabeth, Ducar, Matthew D., Thorner, Aaron R., MacConaill, Laura E.
Published in Cancer research (Chicago, Ill.) (01.07.2018)
Published in Cancer research (Chicago, Ill.) (01.07.2018)
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Abstract 5695: Increased sensitivity for detection of oncogenic mutations present in circulating cell-free tumor DNA
Thorner, Aaron R., Slevin, Michael K., Clapp, Andrea, Coleman, Haley A., McShane, Suzanne R., Drinan, Samantha D., Thai, Edwin, Wollison, Bruce M., Burns, Robert T., Frieden, Alex, Ducar, Matthew D., Nag, Anwesha, MacConaill, Laura E., Meyerson, Matthew L.
Published in Cancer research (Chicago, Ill.) (01.07.2017)
Published in Cancer research (Chicago, Ill.) (01.07.2017)
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Abstract 562: Oncovirus detection and integration analysis from human tumor samples using targeted massively parallel sequencing
Burns, Robert T., Hunter, Samuel S., Ducar, Matthew D., Thorner, Aaron R., Decaprio, James A., Hummelen, Paul Van, Frieden, Alexander, Nag, Anwesha, Coleman, Haley A., Slevin, Michael K., Clapp, Andrea, Drinan, Samantha D., McShane, Suzanne R., Thai, Edwin, Shivdasani, Priyanka, Bohannon, Joshua, Hoeftberger, Johann, Jacobs, Reuben, Wollison, Bruce M., Patel, Neil A., Manam, Monica D., Davineni, Phani, Meyerson, Matthew, MacConaill, Laura E.
Published in Cancer research (Chicago, Ill.) (01.07.2017)
Published in Cancer research (Chicago, Ill.) (01.07.2017)
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