Diagnostic Test Accuracy of a 2-Transcript Host RNA Signature for Discriminating Bacterial vs Viral Infection in Febrile Children
Herberg, Jethro A, Kaforou, Myrsini, Wright, Victoria J, Shailes, Hannah, Eleftherohorinou, Hariklia, Hoggart, Clive J, Cebey-López, Miriam, Carter, Michael J, Janes, Victoria A, Gormley, Stuart, Shimizu, Chisato, Tremoulet, Adriana H, Barendregt, Anouk M, Salas, Antonio, Kanegaye, John, Pollard, Andrew J, Faust, Saul N, Patel, Sanjay, Kuijpers, Taco, Martinón-Torres, Federico, Burns, Jane C, Coin, Lachlan J. M, Levin, Michael
Published in JAMA : the journal of the American Medical Association (23.08.2016)
Published in JAMA : the journal of the American Medical Association (23.08.2016)
Get full text
Journal Article
MultiPhen: joint model of multiple phenotypes can increase discovery in GWAS
O'Reilly, Paul F, Hoggart, Clive J, Pomyen, Yotsawat, Calboli, Federico C F, Elliott, Paul, Jarvelin, Marjo-Riitta, Coin, Lachlan J M
Published in PloS one (02.05.2012)
Published in PloS one (02.05.2012)
Get full text
Journal Article
Diagnosis of Kawasaki Disease Using a Minimal Whole-Blood Gene Expression Signature
Wright, Victoria J, Herberg, Jethro A, Kaforou, Myrsini, Shimizu, Chisato, Eleftherohorinou, Hariklia, Shailes, Hannah, Barendregt, Anouk M, Menikou, Stephanie, Gormley, Stuart, Berk, Maurice, Hoang, Long Truong, Tremoulet, Adriana H, Kanegaye, John T, Coin, Lachlan J M, Glodé, Mary P, Hibberd, Martin, Kuijpers, Taco W, Hoggart, Clive J, Burns, Jane C, Levin, Michael
Published in JAMA pediatrics (01.10.2018)
Published in JAMA pediatrics (01.10.2018)
Get more information
Journal Article
Real-time resolution of short-read assembly graph using ONT long reads
Nguyen, Son Hoang, Cao, Minh Duc, Coin, Lachlan J M
Published in PLoS computational biology (20.01.2021)
Published in PLoS computational biology (20.01.2021)
Get full text
Journal Article
Whole genome deep sequencing analysis of cell-free DNA in samples with low tumour content
Ganesamoorthy, Devika, Robertson, Alan James, Chen, Wenhan, Hall, Michael B, Cao, Minh Duc, Ferguson, Kaltin, Lakhani, Sunil R, Nones, Katia, Simpson, Peter T, Coin, Lachlan J M
Published in BMC cancer (20.01.2022)
Published in BMC cancer (20.01.2022)
Get full text
Journal Article
Genetic determinants of height growth assessed longitudinally from infancy to adulthood in the northern Finland birth cohort 1966
Sovio, Ulla, Bennett, Amanda J, Millwood, Iona Y, Molitor, John, O'Reilly, Paul F, Timpson, Nicholas J, Kaakinen, Marika, Laitinen, Jaana, Haukka, Jari, Pillas, Demetris, Tzoulaki, Ioanna, Molitor, Jassy, Hoggart, Clive, Coin, Lachlan J M, Whittaker, John, Pouta, Anneli, Hartikainen, Anna-Liisa, Freimer, Nelson B, Widen, Elisabeth, Peltonen, Leena, Elliott, Paul, McCarthy, Mark I, Jarvelin, Marjo-Riitta
Published in PLoS genetics (01.03.2009)
Published in PLoS genetics (01.03.2009)
Get full text
Journal Article
Structural variation in two human genomes mapped at single-nucleotide resolution by whole genome de novo assembly
Wang, Jun, Li, Yingrui, Zheng, Hancheng, Luo, Ruibang, Wu, Honglong, Zhu, Hongmei, Li, Ruiqiang, Cao, Hongzhi, Wu, Boxin, Huang, Shujia, Shao, Haojing, Ma, Hanzhou, Zhang, Fan, Feng, Shuijian, Zhang, Wei, Du, Hongli, Tian, Geng, Li, Jingxiang, Zhang, Xiuqing, Li, Songgang, Bolund, Lars, Kristiansen, Karsten, de Smith, Adam J, Blakemore, Alexandra I F, Coin, Lachlan J M, Yang, Huanming, Wang, Jian
Published in Nature biotechnology (01.08.2011)
Published in Nature biotechnology (01.08.2011)
Get full text
Journal Article
Pathway-driven gene stability selection of two rheumatoid arthritis GWAS identifies and validates new susceptibility genes in receptor mediated signalling pathways
Eleftherohorinou, Hariklia, Hoggart, Clive J., Wright, Victoria J., Levin, Michael, Coin, Lachlan J.M.
Published in Human molecular genetics (01.09.2011)
Published in Human molecular genetics (01.09.2011)
Get full text
Journal Article
Rapid diagnosis of Capnocytophaga canimorsus septic shock in an immunocompetent individual using real-time Nanopore sequencing: a case report
Bialasiewicz, Seweryn, Duarte, Tania P S, Nguyen, Son H, Sukumaran, Vichitra, Stewart, Alexandra, Appleton, Sally, Pitt, Miranda E, Bainomugisa, Arnold, Jennison, Amy V, Graham, Rikki, Coin, Lachlan J M, Hajkowicz, Krispin
Published in BMC infectious diseases (24.07.2019)
Published in BMC infectious diseases (24.07.2019)
Get full text
Journal Article
Dysregulation of complement system and CD4+ T cell activation pathways implicated in allergic response
Couto Alves, Alexessander, Bruhn, Sören, Ramasamy, Adaikalavan, Wang, Hui, Holloway, John W, Hartikainen, Anna-Liisa, Jarvelin, Marjo-Riitta, Benson, Mikael, Balding, David J, Coin, Lachlan J M
Published in PloS one (08.10.2013)
Published in PloS one (08.10.2013)
Get full text
Journal Article
Genome sequences of two diploid wild relatives of cultivated sweetpotato reveal targets for genetic improvement
Wu, Shan, Lau, Kin H., Cao, Qinghe, Hamilton, John P., Sun, Honghe, Zhou, Chenxi, Eserman, Lauren, Gemenet, Dorcus C., Olukolu, Bode A., Wang, Haiyan, Crisovan, Emily, Godden, Grant T., Jiao, Chen, Wang, Xin, Kitavi, Mercy, Manrique-Carpintero, Norma, Vaillancourt, Brieanne, Wiegert-Rininger, Krystle, Yang, Xinsun, Bao, Kan, Schaff, Jennifer, Kreuze, Jan, Gruneberg, Wolfgang, Khan, Awais, Ghislain, Marc, Ma, Daifu, Jiang, Jiming, Mwanga, Robert O. M., Leebens-Mack, Jim, Coin, Lachlan J. M., Yencho, G. Craig, Buell, C. Robin, Fei, Zhangjun
Published in Nature communications (02.11.2018)
Published in Nature communications (02.11.2018)
Get full text
Journal Article
Positive-unlabeled learning in bioinformatics and computational biology: a brief review
Li, Fuyi, Dong, Shuangyu, Leier, André, Han, Meiya, Guo, Xudong, Xu, Jing, Wang, Xiaoyu, Pan, Shirui, Jia, Cangzhi, Zhang, Yang, Webb, Geoffrey I, Coin, Lachlan J M, Li, Chen, Song, Jiangning
Published in Briefings in bioinformatics (17.01.2022)
Published in Briefings in bioinformatics (17.01.2022)
Get full text
Journal Article
Detection of Streptococcus pyogenes M1UK in Australia and characterization of the mutation driving enhanced expression of superantigen SpeA
Davies, Mark R., Keller, Nadia, Brouwer, Stephan, Jespersen, Magnus G., Cork, Amanda J., Hayes, Andrew J., Pitt, Miranda E., De Oliveira, David M. P., Harbison-Price, Nichaela, Bertolla, Olivia M., Mediati, Daniel G., Curren, Bodie F., Taiaroa, George, Lacey, Jake A., Smith, Helen V., Fang, Ning-Xia, Coin, Lachlan J. M., Stevens, Kerrie, Tong, Steven Y. C., Sanderson-Smith, Martina, Tree, Jai J., Irwin, Adam D., Grimwood, Keith, Howden, Benjamin P., Jennison, Amy V., Walker, Mark J.
Published in Nature communications (24.02.2023)
Published in Nature communications (24.02.2023)
Get full text
Journal Article
Diagnosis of Bacterial Infection Using a 2-Transcript Host RNA Signature in Febrile Infants 60 Days or Younger
Kaforou, Myrsini, Herberg, Jethro A, Wright, Victoria J, Coin, Lachlan J. M, Levin, Michael
Published in JAMA : the journal of the American Medical Association (18.04.2017)
Published in JAMA : the journal of the American Medical Association (18.04.2017)
Get full text
Journal Article
Quantitative trait loci and differential gene expression analyses reveal the genetic basis for negatively associated β-carotene and starch content in hexaploid sweetpotato [Ipomoea batatas (L.) Lam.]
Gemenet, Dorcus C., da Silva Pereira, Guilherme, De Boeck, Bert, Wood, Joshua C., Mollinari, Marcelo, Olukolu, Bode A., Diaz, Federico, Mosquera, Veronica, Ssali, Reuben T., David, Maria, Kitavi, Mercy N., Burgos, Gabriela, Felde, Thomas Zum, Ghislain, Marc, Carey, Edward, Swanckaert, Jolien, Coin, Lachlan J. M., Fei, Zhangjun, Hamilton, John P., Yada, Benard, Yencho, G. Craig, Zeng, Zhao-Bang, Mwanga, Robert O. M., Khan, Awais, Gruneberg, Wolfgang J., Buell, C. Robin
Published in Theoretical and applied genetics (01.01.2020)
Published in Theoretical and applied genetics (01.01.2020)
Get full text
Journal Article
Haplotype and isoform specific expression estimation using multi-mapping RNA-seq reads
Turro, Ernest, Su, Shu-Yi, Gonçalves, Ângela, Coin, Lachlan J M, Richardson, Sylvia, Lewin, Alex
Published in Genome biology (10.02.2011)
Published in Genome biology (10.02.2011)
Get full text
Journal Article
npInv: accurate detection and genotyping of inversions using long read sub-alignment
Shao, Haojing, Ganesamoorthy, Devika, Duarte, Tania, Cao, Minh Duc, Hoggart, Clive J, Coin, Lachlan J M
Published in BMC bioinformatics (13.07.2018)
Published in BMC bioinformatics (13.07.2018)
Get full text
Journal Article
Comparison of long-read methods for sequencing and assembly of a plant genome
Murigneux, Valentine, Rai, Subash Kumar, Furtado, Agnelo, Bruxner, Timothy J C, Tian, Wei, Harliwong, Ivon, Wei, Hanmin, Yang, Bicheng, Ye, Qianyu, Anderson, Ellis, Mao, Qing, Drmanac, Radoje, Wang, Ou, Peters, Brock A, Xu, Mengyang, Wu, Pei, Topp, Bruce, Coin, Lachlan J M, Henry, Robert J
Published in Gigascience (21.12.2020)
Published in Gigascience (21.12.2020)
Get full text
Journal Article