A5-miseq: an updated pipeline to assemble microbial genomes from Illumina MiSeq data
Coil, David, Jospin, Guillaume, Darling, Aaron E
Published in Bioinformatics (Oxford, England) (15.02.2015)
Published in Bioinformatics (Oxford, England) (15.02.2015)
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Journal Article
2019 Novel Coronavirus (COVID-19) Pandemic: Built Environment Considerations To Reduce Transmission
Dietz, Leslie, Horve, Patrick F, Coil, David A, Fretz, Mark, Eisen, Jonathan A, Van Den Wymelenberg, Kevin
Published in mSystems (07.04.2020)
Published in mSystems (07.04.2020)
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Journal Article
The challenge of SARS-CoV-2 environmental monitoring in schools using floors and portable HEPA filtration units: Fresh or relic RNA?
Zuniga-Montanez, Rogelio, Coil, David A, Eisen, Jonathan A, Pechacek, Randi, Guerrero, Roque G, Kim, Minji, Shapiro, Karen, Bischel, Heather N
Published in PloS one (22.04.2022)
Published in PloS one (22.04.2022)
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Journal Article
SARS-CoV-2 detection and genomic sequencing from hospital surface samples collected at UC Davis
Coil, David A, Albertson, Timothy, Banerjee, Shefali, Brennan, Greg, Campbell, A J, Cohen, Stuart H, Dandekar, Satya, Díaz-Muñoz, Samuel L, Eisen, Jonathan A, Goldstein, Tracey, Jose, Ivy R, Juarez, Maya, Robinson, Brandt A, Rothenburg, Stefan, Sandrock, Christian, Stoian, Ana M M, Tompkins, Daniel G, Tremeau-Bravard, Alexandre, Haczku, Angela
Published in PloS one (24.06.2021)
Published in PloS one (24.06.2021)
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Journal Article
Schrödinger's microbes: Tools for distinguishing the living from the dead in microbial ecosystems
Emerson, Joanne B, Adams, Rachel I, Román, Clarisse M Betancourt, Brooks, Brandon, Coil, David A, Dahlhausen, Katherine, Ganz, Holly H, Hartmann, Erica M, Hsu, Tiffany, Justice, Nicholas B, Paulino-Lima, Ivan G, Luongo, Julia C, Lymperopoulou, Despoina S, Gomez-Silvan, Cinta, Rothschild-Mancinelli, Brooke, Balk, Melike, Huttenhower, Curtis, Nocker, Andreas, Vaishampayan, Parag, Rothschild, Lynn J
Published in Microbiome (16.08.2017)
Published in Microbiome (16.08.2017)
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Journal Article
Genome Analysis of Streptococcus pyogenes Associated with Pharyngitis and Skin Infections
Ibrahim, Joe, Eisen, Jonathan A, Jospin, Guillaume, Coil, David A, Khazen, Georges, Tokajian, Sima
Published in PloS one (15.12.2016)
Published in PloS one (15.12.2016)
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Journal Article
Network analysis to evaluate the impact of research funding on research community consolidation
Hicks, Daniel J, Coil, David A, Stahmer, Carl G, Eisen, Jonathan A
Published in PloS one (18.06.2019)
Published in PloS one (18.06.2019)
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Journal Article
Characterization of the microbiome and volatile compounds in anal gland secretions from domestic cats (Felis catus) using metagenomics and metabolomics
Rojas, Connie A, Marks, Stanley L, Borras, Eva, Lesea, Hira, McCartney, Mitchell M, Coil, David A, Davis, Cristina E, Eisen, Jonathan A
Published in Scientific reports (08.11.2023)
Published in Scientific reports (08.11.2023)
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Journal Article
Whole genome sequence analysis reveals the broad distribution of the RtxA type 1 secretion system and four novel putative type 1 secretion systems throughout the Legionella genus
Brown, Connor L, Garner, Emily, Jospin, Guillaume, Coil, David A, Schwake, David O, Eisen, Jonathan A, Mukhopadhyay, Biswarup, Pruden, Amy J
Published in PloS one (14.01.2020)
Published in PloS one (14.01.2020)
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Journal Article
Bacteria isolated from Bengal cat (Felis catus × Prionailurus bengalensis) anal sac secretions produce volatile compounds potentially associated with animal signaling
Yamaguchi, Mei S, Ganz, Holly H, Cho, Adrienne W, Zaw, Thant H, Jospin, Guillaume, McCartney, Mitchell M, Davis, Cristina E, Eisen, Jonathan A, Coil, David A
Published in PloS one (13.09.2019)
Published in PloS one (13.09.2019)
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Journal Article
Genomes from bacteria associated with the canine oral cavity: A test case for automated genome-based taxonomic assignment
Coil, David A, Jospin, Guillaume, Darling, Aaron E, Wallis, Corrin, Davis, Ian J, Harris, Stephen, Eisen, Jonathan A, Holcombe, Lucy J, O'Flynn, Ciaran
Published in PloS one (10.06.2019)
Published in PloS one (10.06.2019)
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Journal Article
Comparison of Whole-Genome Sequences of Legionella pneumophila in Tap Water and in Clinical Strains, Flint, Michigan, USA, 2016
Garner, Emily, Brown, Connor L, Schwake, David Otto, Rhoads, William J, Arango-Argoty, Gustavo, Zhang, Liqing, Jospin, Guillaume, Coil, David A, Eisen, Jonathan A, Edwards, Marc A, Pruden, Amy
Published in Emerging infectious diseases (01.11.2019)
Published in Emerging infectious diseases (01.11.2019)
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Journal Article
A microbial survey of the International Space Station (ISS)
Lang, Jenna M, Coil, David A, Neches, Russell Y, Brown, Wendy E, Cavalier, Darlene, Severance, Mark, Hampton-Marcell, Jarrad T, Gilbert, Jack A, Eisen, Jonathan A
Published in PeerJ (San Francisco, CA) (05.12.2017)
Published in PeerJ (San Francisco, CA) (05.12.2017)
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Journal Article
Viral Load Among Vaccinated and Unvaccinated, Asymptomatic and Symptomatic Persons Infected With the SARS-CoV-2 Delta Variant
Acharya, Charlotte B, Schrom, John, Mitchell, Anthea M, Coil, David A, Marquez, Carina, Rojas, Susana, Wang, Chung Yu, Liu, Jamin, Pilarowski, Genay, Solis, Leslie, Georgian, Elizabeth, Belafsky, Sheri, Petersen, Maya, DeRisi, Joseph, Michelmore, Richard, Havlir, Diane
Published in Open forum infectious diseases (01.05.2022)
Published in Open forum infectious diseases (01.05.2022)
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Journal Article