Agent-based modeling of oxygen-responsive transcription factors in Escherichia coli
Bai, Hao, Rolfe, Matthew D, Jia, Wenjing, Coakley, Simon, Poole, Robert K, Green, Jeffrey, Holcombe, Mike
Published in PLoS computational biology (01.04.2014)
Published in PLoS computational biology (01.04.2014)
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Journal Article
High performance cellular level agent-based simulation with FLAME for the GPU
Richmond, Paul, Walker, Dawn, Coakley, Simon, Romano, Daniela
Published in Briefings in bioinformatics (01.05.2010)
Published in Briefings in bioinformatics (01.05.2010)
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Journal Article
Modelling complex biological systems using an agent-based approach
Holcombe, Mike, Adra, Salem, Bicak, Mesude, Chin, Shawn, Coakley, Simon, Graham, Alison I, Green, Jeffrey, Greenough, Chris, Jackson, Duncan, Kiran, Mariam, MacNeil, Sheila, Maleki-Dizaji, Afsaneh, McMinn, Phil, Pogson, Mark, Poole, Robert, Qwarnstrom, Eva, Ratnieks, Francis, Rolfe, Matthew D, Smallwood, Rod, Sun, Tao, Worth, David
Published in Integrative biology (Cambridge) (01.01.2012)
Published in Integrative biology (Cambridge) (01.01.2012)
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Journal Article
Validation and discovery from computational biology models
Kiran, Mariam, Coakley, Simon, Walkinshaw, Neil, McMinn, Phil, Holcombe, Mike
Published in BioSystems (01.07.2008)
Published in BioSystems (01.07.2008)
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Journal Article
Exploitation of High Performance Computing in the FLAME Agent-Based Simulation Framework
Coakley, S., Gheorghe, M., Holcombe, M., Chin, S., Worth, D., Greenough, C.
Published in 2012 IEEE 14th International Conference on High Performance Computing and Communication & 2012 IEEE 9th International Conference on Embedded Software and Systems (01.06.2012)
Published in 2012 IEEE 14th International Conference on High Performance Computing and Communication & 2012 IEEE 9th International Conference on Embedded Software and Systems (01.06.2012)
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Conference Proceeding
Cellular Level Agent Based Modelling on the Graphics Processing Unit
Richmond, P., Coakley, S., Romano, D.
Published in 2009 International Workshop on High Performance Computational Systems Biology (01.10.2009)
Published in 2009 International Workshop on High Performance Computational Systems Biology (01.10.2009)
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Conference Proceeding