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NEBULA is a fast negative binomial mixed model for differential or co-expression analysis of large-scale multi-subject single-cell data
He, Liang, Davila-Velderrain, Jose, Sumida, Tomokazu S., Hafler, David A., Kellis, Manolis, Kulminski, Alexander M.
Published in Communications Biology (26.05.2021)
Published in Communications Biology (26.05.2021)
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Gene co-expression analysis identifies modules related to insufficient sleep in humans
Ye, Hua, Huang, Shiliang, Song, Yufei, Liu, Huiwei, Zhao, Xiaosu, Zhao, Dan, Mi, Fangxia, Wang, Xinxue, Zhang, Xuesong, Du, Jinman, Zhu, Na, Zhang, Liangshun, Zhao, Yibin
Published in Sleep medicine (01.10.2021)
Published in Sleep medicine (01.10.2021)
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Genome-wide analysis of starch metabolism genes in potato (Solanum tuberosum L.)
Van Harsselaar, Jessica K., Lorenz, Julia, Senning, Melanie, Sonnewald, Uwe, Sonnewald, Sophia
Published in BMC genomics (05.01.2017)
Published in BMC genomics (05.01.2017)
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The Gene Network Correlation Analysis of Obesity to Type 1 Diabetes and Cardiovascular Disorders: An Interactome-Based Bioinformatics Approach
D’Souza, Sharon Elaine, Khan, Kanwal, Jalal, Khurshid, Hassam, Muhammad, Uddin, Reaz
Published in Molecular biotechnology (01.08.2024)
Published in Molecular biotechnology (01.08.2024)
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A database for polar [Populus] gene co-expression analysis for systematic understanding of biological processes, including stress responses
Ogata, Y., Kazusa DNA Research Inst., Kisarazu, Chiba (Japan), Suzuki, H, Shibata, D
Published in Journal of wood science (01.12.2009)
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Published in Journal of wood science (01.12.2009)
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Joint analysis of lncRNA m6A methylome and lncRNA/mRNA expression profiles in gastric cancer
Lv, Zhi, Sun, Liping, Xu, Qian, Xing, Chengzhong, Yuan, Yuan
Published in Cancer cell international (25.09.2020)
Published in Cancer cell international (25.09.2020)
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COEXPEDIA: exploring biomedical hypotheses via co-expressions associated with medical subject headings (MeSH)
Yang, Sunmo, Kim, Chan Yeong, Hwang, Sohyun, Kim, Eiru, Kim, Hyojin, Shim, Hongseok, Lee, Insuk
Published in Nucleic acids research (04.01.2017)
Published in Nucleic acids research (04.01.2017)
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DCGL v2.0: An R Package for Unveiling Differential Regulation from Differential Co-expression
Yang, Jing, Yu, Hui, Liu, Bao-Hong, Zhao, Zhongming, Liu, Lei, Ma, Liang-Xiao, Li, Yi-Xue, Li, Yuan-Yuan
Published in PloS one (20.11.2013)
Published in PloS one (20.11.2013)
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Multi-platform proteomic analysis of Alzheimer’s disease cerebrospinal fluid and plasma reveals network biomarkers associated with proteostasis and the matrisome
Dammer, Eric B., Ping, Lingyan, Duong, Duc M., Modeste, Erica S., Seyfried, Nicholas T., Lah, James J., Levey, Allan I., Johnson, Erik C. B.
Published in Alzheimer's research & therapy (17.11.2022)
Published in Alzheimer's research & therapy (17.11.2022)
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Shannon entropy approach reveals relevant genes in Alzheimer’s disease
Monaco, Alfonso, Amoroso, Nicola, Bellantuono, Loredana, Lella, Eufemia, Lombardi, Angela, Monda, Anna, Tateo, Andrea, Bellotti, Roberto, Tangaro, Sabina
Published in PloS one (31.12.2019)
Published in PloS one (31.12.2019)
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Transcriptomic signatures of brain regional vulnerability to Parkinson’s disease
Keo, Arlin, Mahfouz, Ahmed, Ingrassia, Angela M. T., Meneboo, Jean-Pascal, Villenet, Celine, Mutez, Eugénie, Comptdaer, Thomas, Lelieveldt, Boudewijn P. F., Figeac, Martin, Chartier-Harlin, Marie-Christine, van de Berg, Wilma D. J., van Hilten, Jacobus J., Reinders, Marcel J. T.
Published in Communications biology (05.03.2020)
Published in Communications biology (05.03.2020)
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Integrating Molecular Perspectives: Strategies for Comprehensive Multi-Omics Integrative Data Analysis and Machine Learning Applications in Transcriptomics, Proteomics, and Metabolomics
Sanches, Pedro H. Godoy, de Melo, Nicolly Clemente, Porcari, Andreia M., de Carvalho, Lucas Miguel
Published in Biology (Basel, Switzerland) (01.11.2024)
Published in Biology (Basel, Switzerland) (01.11.2024)
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LncRNA-mRNA co-expression network in the mechanism of butylphthalide treatment for ischemic stroke
An, Yangfang, Huang, Lingyun, Li, Jun, Chen, Zhuo, Cai, Jizhang, Wang, Biao, Zhou, Qiong
Published in BMC neurology (10.04.2025)
Published in BMC neurology (10.04.2025)
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Cytokine and chemokine expression profiles in response to Mycobacterium tuberculosis stimulation are altered in HIV-infected compared to HIV-uninfected subjects with active tuberculosis
Waruk, Jillian L.M., Machuki, Zipporah, Mesa, Christine, Juno, Jennifer A., Anzala, Omu, Sharma, Meenu, Ball, T. Blake, Oyugi, Julius, Kiazyk, Sandra
Published in Tuberculosis (Edinburgh, Scotland) (01.09.2015)
Published in Tuberculosis (Edinburgh, Scotland) (01.09.2015)
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