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NEBULA is a fast negative binomial mixed model for differential or co-expression analysis of large-scale multi-subject single-cell data
He, Liang, Davila-Velderrain, Jose, Sumida, Tomokazu S., Hafler, David A., Kellis, Manolis, Kulminski, Alexander M.
Published in Communications Biology (26.05.2021)
Published in Communications Biology (26.05.2021)
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High-Dimensional Covariance Regression with Application to Co-Expression QTL Detection
Kim, Rakheon, Zhang, Jingfei
Published in Journal of the American Statistical Association (21.08.2025)
Published in Journal of the American Statistical Association (21.08.2025)
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Integrating mRNA and miRNA Weighted Gene Co-Expression Networks with eQTLs in the Nucleus Accumbens of Subjects with Alcohol Dependence
Mamdani, Mohammed, Williamson, Vernell, McMichael, Gowon O., Blevins, Tana, Aliev, Fazil, Adkins, Amy, Hack, Laura, Bigdeli, Tim, D. van der Vaart, Andrew, Web, Bradley Todd, Bacanu, Silviu-Alin, Kalsi, Gursharan, Kendler, Kenneth S., Miles, Michael F., Dick, Danielle, Riley, Brien P., Dumur, Catherine, Vladimirov, Vladimir I.
Published in PloS one (18.09.2015)
Published in PloS one (18.09.2015)
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Co-expression network analysis of frontal cortex during the progression of Alzheimer’s disease
Beck, John S, Madaj, Zachary, Cheema, Calvin T, Kara, Betul, Bennett, David A, Schneider, Julie A, Gordon, Marcia N, Ginsberg, Stephen D, Mufson, Elliott J, Counts, Scott E
Published in Cerebral cortex (New York, N.Y. 1991) (09.11.2022)
Published in Cerebral cortex (New York, N.Y. 1991) (09.11.2022)
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Enforcing Co-Expression Within a Brain-Imaging Genomics Regression Framework
Zille, Pascal, Calhoun, Vince D., Wang, Yu-ping
Published in IEEE transactions on medical imaging (01.12.2018)
Published in IEEE transactions on medical imaging (01.12.2018)
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Co-Expression Effect of SLC7A5/SLC3A2 to Predict Response to Endocrine Therapy in Oestrogen-Receptor-Positive Breast Cancer
Alfarsi, Lutfi H., El-Ansari, Rokaya, Craze, Madeleine L., Masisi, Brendah K., Mohammed, Omar J., Ellis, Ian O., Rakha, Emad A., Green, Andrew R.
Published in International journal of molecular sciences (19.02.2020)
Published in International journal of molecular sciences (19.02.2020)
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Brain lncRNA-mRNA co-expression regulatory networks and alcohol use disorder
Besong, Ojong Tabi Ojong, Koo, Ji Sun, Zhang, Huiping
Published in Genomics (San Diego, Calif.) (01.09.2024)
Published in Genomics (San Diego, Calif.) (01.09.2024)
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Impact of sarcosine on diabetic retinopathy: Findings based on weighted gene co‐expression network analysis and machine learning techniques
Che, Mingzhu, Xia, Zhezheng, Jiang, Depeng, Wang, Yanan, Wang, Hui, Chen, Yuxin, Wang, Ziyi, Chen, Yang, Zhang, Xinlv, Zhang, Zejie, Guo, Chengnan, Zhang, Xiaoyu, Zheng, Chao, Mao, Guangyun
Published in Diabetes, obesity & metabolism (01.12.2023)
Published in Diabetes, obesity & metabolism (01.12.2023)
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Spore germination response to capsule size and smoke: co‐expression of bet‐hedging and best‐bet strategies in peatland mosses
Yusup, S., Sundberg, S., Ilghar, W., Mallik, A., Fan, B.‐B., Zhang, J.‐Q., Wang, J.‐Y., Bu, Z.‐J.
Published in Plant biology (Stuttgart, Germany) (21.05.2025)
Published in Plant biology (Stuttgart, Germany) (21.05.2025)
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A polygenic score indexing a DRD2-related co-expression network is associated with striatal dopamine function
D’Ambrosio, Enrico, Pergola, Giulio, Pardiñas, Antonio F., Dahoun, Tarik, Veronese, Mattia, Sportelli, Leonardo, Taurisano, Paolo, Griffiths, Kira, Jauhar, Sameer, Rogdaki, Maria, Bloomfield, Michael A. P., Froudist-Walsh, Sean, Bonoldi, Ilaria, Walters, James T. R., Blasi, Giuseppe, Bertolino, Alessandro, Howes, Oliver D.
Published in Scientific reports (23.07.2022)
Published in Scientific reports (23.07.2022)
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Weighted gene co-expression network analysis reveals genes related to growth performance in Hu sheep
Wang, Qiang, Xu, Jie, Bao, Menghuan, Wang, Huining, Sun, XiaoMei, Ji, Dejun, Wang, Jian, Li, Yongjun
Published in Scientific reports (06.06.2024)
Published in Scientific reports (06.06.2024)
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Weighted gene co-expression network analysis identified GBP2 connected to PPARα activity and liver cancer
AmeliMojarad, Mandana, AmeliMojarad, Melika, Cui, Xiaonan
Published in Scientific reports (05.09.2024)
Published in Scientific reports (05.09.2024)
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Co-expression profiling of plasma miRNAs and long noncoding RNAs in gastric cancer patients
Ghaedi, Hamid, Mozaffari, Mohammad Amin Nazer, Salehi, Zaker, Ghasemi, Hassan, Zadian, Seyed Sajjad, Alipoor, Sadegh, Hadianpour, Shiva, Alipoor, Behnam
Published in Gene (01.03.2019)
Published in Gene (01.03.2019)
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SLC1A5 co-expression with TALDO1 associates with endocrine therapy failure in estrogen receptor-positive breast cancer
Alfarsi, Lutfi H., El Ansari, Rokaya, Craze, Madeleine L., Mohammed, Omar J., Masisi, Brendah K., Ellis, Ian O., Rakha, Emad A., Green, Andrew R.
Published in Breast cancer research and treatment (01.09.2021)
Published in Breast cancer research and treatment (01.09.2021)
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