CLARK: fast and accurate classification of metagenomic and genomic sequences using discriminative k-mers
Ounit, Rachid, Wanamaker, Steve, Close, Timothy J, Lonardi, Stefano
Published in BMC genomics (25.03.2015)
Published in BMC genomics (25.03.2015)
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Efficient and accurate construction of genetic linkage maps from the minimum spanning tree of a graph
Wu, Yonghui, Bhat, Prasanna R, Close, Timothy J, Lonardi, Stefano
Published in PLoS genetics (01.10.2008)
Published in PLoS genetics (01.10.2008)
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The genome of cowpea (Vigna unguiculata [L.] Walp.)
Lonardi, Stefano, Muñoz‐Amatriaín, María, Liang, Qihua, Shu, Shengqiang, Wanamaker, Steve I., Lo, Sassoum, Tanskanen, Jaakko, Schulman, Alan H., Zhu, Tingting, Luo, Ming‐Cheng, Alhakami, Hind, Ounit, Rachid, Hasan, Abid Md, Verdier, Jerome, Roberts, Philip A., Santos, Jansen R.P., Ndeve, Arsenio, Doležel, Jaroslav, Vrána, Jan, Hokin, Samuel A., Farmer, Andrew D., Cannon, Steven B., Close, Timothy J.
Published in The Plant journal : for cell and molecular biology (01.06.2019)
Published in The Plant journal : for cell and molecular biology (01.06.2019)
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Journal Article
Identification of QTL for perenniality and floral scent in cowpea (Vigna unguiculata [L.] Walp.)
Lo, Sassoum, Fatokun, Christian, Boukar, Ousmane, Gepts, Paul, Close, Timothy J, Muñoz-Amatriaín, María
Published in PloS one (28.04.2020)
Published in PloS one (28.04.2020)
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Journal Article
Identification and comparative analysis of drought-associated microRNAs in two cowpea genotypes
Barrera-Figueroa, Blanca E, Gao, Lei, Diop, Ndeye N, Wu, Zhigang, Ehlers, Jeffrey D, Roberts, Philip A, Close, Timothy J, Zhu, Jian-Kang, Liu, Renyi
Published in BMC plant biology (17.09.2011)
Published in BMC plant biology (17.09.2011)
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Journal Article
A receptor-like protein mediates plant immune responses to herbivore-associated molecular patterns
Steinbrenner, Adam D., Muñoz-Amatriaín, Maria, Chaparro, Antonio F., Aguilar-Venegas, Jessica Montserrat, Lo, Sassoum, Okuda, Satohiro, Glauser, Gaetan, Dongiovanni, Julien, Shi, Da, Hall, Marlo, Crubaugh, Daniel, Holton, Nicholas, Zipfel, Cyril, Abagyan, Ruben, Turlings, Ted C. J., Close, Timothy J., Huffaker, Alisa, Schmelz, Eric A.
Published in Proceedings of the National Academy of Sciences - PNAS (08.12.2020)
Published in Proceedings of the National Academy of Sciences - PNAS (08.12.2020)
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Journal Article
Identification of QTL controlling domestication-related traits in cowpea (Vigna unguiculata L. Walp)
Lo, Sassoum, Muñoz-Amatriaín, María, Boukar, Ousmane, Herniter, Ira, Cisse, Ndiaga, Guo, Yi-Ning, Roberts, Philip A., Xu, Shizhong, Fatokun, Christian, Close, Timothy J.
Published in Scientific reports (19.04.2018)
Published in Scientific reports (19.04.2018)
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Journal Article
Genic SNP markers and legume synteny reveal candidate genes underlying QTL for Macrophomina phaseolina resistance and maturity in cowpea [Vigna unguiculata (L) Walp.]
Muchero, Wellington, Ehlers, Jeffrey D, Close, Timothy J, Roberts, Philip A
Published in BMC genomics (05.01.2011)
Published in BMC genomics (05.01.2011)
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Journal Article
Genetic architecture of delayed senescence, biomass, and grain yield under drought stress in cowpea
Muchero, Wellington, Roberts, Philip A, Diop, Ndeye N, Drabo, Issa, Cisse, Ndiaga, Close, Timothy J, Muranaka, Satoru, Boukar, Ousmane, Ehlers, Jeffrey D
Published in PloS one (30.07.2013)
Published in PloS one (30.07.2013)
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Journal Article
A multi‐parent advanced generation inter‐cross (MAGIC) population for genetic analysis and improvement of cowpea (Vigna unguiculata L. Walp.)
Huynh, Bao‐Lam, Ehlers, Jeffrey D., Huang, Bevan Emma, Muñoz‐Amatriaín, María, Lonardi, Stefano, Santos, Jansen R. P., Ndeve, Arsenio, Batieno, Benoit J., Boukar, Ousmane, Cisse, Ndiaga, Drabo, Issa, Fatokun, Christian, Kusi, Francis, Agyare, Richard Y., Guo, Yi‐Ning, Herniter, Ira, Lo, Sassoum, Wanamaker, Steve I., Xu, Shizhong, Close, Timothy J., Roberts, Philip A.
Published in The Plant journal : for cell and molecular biology (01.03.2018)
Published in The Plant journal : for cell and molecular biology (01.03.2018)
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Journal Article
454 sequencing put to the test using the complex genome of barley
Wicker, Thomas, Schlagenhauf, Edith, Graner, Andreas, Close, Timothy J, Keller, Beat, Stein, Nils
Published in BMC genomics (26.10.2006)
Published in BMC genomics (26.10.2006)
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De novo meta-assembly of ultra-deep sequencing data
Mirebrahim, Hamid, Close, Timothy J, Lonardi, Stefano
Published in Bioinformatics (Oxford, England) (15.06.2015)
Published in Bioinformatics (Oxford, England) (15.06.2015)
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Anchoring and ordering NGS contig assemblies by population sequencing (POPSEQ)
Mascher, Martin, Muehlbauer, Gary J., Rokhsar, Daniel S., Chapman, Jarrod, Schmutz, Jeremy, Barry, Kerrie, Muñoz‐Amatriaín, María, Close, Timothy J., Wise, Roger P., Schulman, Alan H., Himmelbach, Axel, Mayer, Klaus F.X., Scholz, Uwe, Poland, Jesse A., Stein, Nils, Waugh, Robbie
Published in The Plant journal : for cell and molecular biology (01.11.2013)
Published in The Plant journal : for cell and molecular biology (01.11.2013)
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Journal Article
Development and implementation of high-throughput SNP genotyping in barley
Close, Timothy J, Bhat, Prasanna R, Lonardi, Stefano, Wu, Yonghui, Rostoks, Nils, Ramsay, Luke, Druka, Arnis, Stein, Nils, Svensson, Jan T, Wanamaker, Steve, Bozdag, Serdar, Roose, Mikeal L, Moscou, Matthew J, Chao, Shiaoman, Varshney, Rajeev K, Szucs, Péter, Sato, Kazuhiro, Hayes, Patrick M, Matthews, David E, Kleinhofs, Andris, Muehlbauer, Gary J, DeYoung, Joseph, Marshall, David F, Madishetty, Kavitha, Fenton, Raymond D, Condamine, Pascal, Graner, Andreas, Waugh, Robbie
Published in BMC genomics (04.12.2009)
Published in BMC genomics (04.12.2009)
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Journal Article
A genome-wide association and meta-analysis reveal regions associated with seed size in cowpea [Vigna unguiculata (L.) Walp]
Lo, Sassoum, Muñoz-Amatriaín, María, Hokin, Samuel A., Cisse, Ndiaga, Roberts, Philip A., Farmer, Andrew D., Xu, Shizhong, Close, Timothy J.
Published in Theoretical and applied genetics (01.11.2019)
Published in Theoretical and applied genetics (01.11.2019)
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Journal Article
Genomic resources in plant breeding for sustainable agriculture
Thudi, Mahendar, Palakurthi, Ramesh, Schnable, James C., Chitikineni, Annapurna, Dreisigacker, Susanne, Mace, Emma, Srivastava, Rakesh K., Satyavathi, C. Tara, Odeny, Damaris, Tiwari, Vijay K., Lam, Hon-Ming, Hong, Yan Bin, Singh, Vikas K., Li, Guowei, Xu, Yunbi, Chen, Xiaoping, Kaila, Sanjay, Nguyen, Henry, Sivasankar, Sobhana, Jackson, Scott A., Close, Timothy J., Shubo, Wan, Varshney, Rajeev K.
Published in Journal of plant physiology (01.02.2021)
Published in Journal of plant physiology (01.02.2021)
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Journal Article
Genomic Tools in Cowpea Breeding Programs: Status and Perspectives
Boukar, Ousmane, Fatokun, Christian A, Huynh, Bao-Lam, Roberts, Philip A, Close, Timothy J
Published in Frontiers in plant science (03.06.2016)
Published in Frontiers in plant science (03.06.2016)
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Journal Article
Genetic and physical mapping of candidate genes for resistance to Fusarium oxysporum f.sp. tracheiphilum race 3 in cowpea [Vigna unguiculata (L.) Walp]
Pottorff, Marti, Wanamaker, Steve, Ma, Yaqin Q, Ehlers, Jeffrey D, Roberts, Philip A, Close, Timothy J
Published in PloS one (31.07.2012)
Published in PloS one (31.07.2012)
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Journal Article
Genetic, anatomical, and environmental patterns related to pod shattering resistance in domesticated cowpea [ Vigna unguiculata (L.) Walp]
Lo, Sassoum, Parker, Travis, Muñoz-Amatriaín, María, Berny-Mier y Teran, Jorge C, Jernstedt, Judy, Close, Timothy J, Gepts, Paul
Published in Journal of experimental botany (30.09.2021)
Published in Journal of experimental botany (30.09.2021)
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