Pathoscope: species identification and strain attribution with unassembled sequencing data
Francis, Owen E, Bendall, Matthew, Manimaran, Solaiappan, Hong, Changjin, Clement, Nathan L, Castro-Nallar, Eduardo, Snell, Quinn, Schaalje, G Bruce, Clement, Mark J, Crandall, Keith A, Johnson, W Evan
Published in Genome research (01.10.2013)
Published in Genome research (01.10.2013)
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Journal Article
The GNUMAP algorithm: unbiased probabilistic mapping of oligonucleotides from next-generation sequencing
Clement, Nathan L., Snell, Quinn, Clement, Mark J., Hollenhorst, Peter C., Purwar, Jahnvi, Graves, Barbara J., Cairns, Bradley R., Johnson, W. Evan
Published in Bioinformatics (01.01.2010)
Published in Bioinformatics (01.01.2010)
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Journal Article
Probabilistic alignment leads to improved accuracy and read coverage for bisulfite sequencing data
Hong, Changjin, Clement, Nathan L, Clement, Spencer, Hammoud, Saher Sue, Carrell, Douglas T, Cairns, Bradley R, Snell, Quinn, Clement, Mark J, Johnson, William Evan
Published in BMC bioinformatics (21.11.2013)
Published in BMC bioinformatics (21.11.2013)
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Journal Article
Parallel Mapping Approaches for GNUMAP
Clement, N. L., Clement, M. J., Snell, Q., Johnson, W. E.
Published in 2011 IEEE International Symposium on Parallel and Distributed Processing Workshops and Phd Forum (2011)
Published in 2011 IEEE International Symposium on Parallel and Distributed Processing Workshops and Phd Forum (2011)
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Conference Proceeding
Journal Article
Parallel Pair-HMM SNP Detection
Clement, N. L., Shepherd, B. A., Bodily, P., Tumur-Ochir, S., Younghoon Gim, Snell, Q., Clement, M. J., Johnson, W. E.
Published in 2012 IEEE 26th International Parallel and Distributed Processing Symposium Workshops & PhD Forum (01.05.2012)
Published in 2012 IEEE 26th International Parallel and Distributed Processing Symposium Workshops & PhD Forum (01.05.2012)
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Conference Proceeding