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The rumen microbiome inhibits methane formation through dietary choline supplementation
Li, Yang, Kreuzer, Michael, Clayssen, Quentin, Ebert, Marc-Olivier, Ruscheweyh, Hans-Joachim, Sunagawa, Shinichi, Kunz, Carmen, Attwood, Graeme, Amelchanka, Sergej, Terranova, Melissa
Published in Scientific reports (05.11.2021)
Published in Scientific reports (05.11.2021)
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Cultivation-independent genomes greatly expand taxonomic-profiling capabilities of mOTUs across various environments
Ruscheweyh, Hans-Joachim, Milanese, Alessio, Paoli, Lucas, Karcher, Nicolai, Clayssen, Quentin, Keller, Marisa Isabell, Wirbel, Jakob, Bork, Peer, Mende, Daniel R., Zeller, Georg, Sunagawa, Shinichi
Published in Microbiome (05.12.2022)
Published in Microbiome (05.12.2022)
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Functional repertoire convergence of distantly related eukaryotic plankton lineages abundant in the sunlit ocean
Delmont, Tom O., Gaia, Morgan, Hinsinger, Damien D., Frémont, Paul, Vanni, Chiara, Fernandez-Guerra, Antonio, Eren, A. Murat, Kourlaiev, Artem, d'Agata, Leo, Clayssen, Quentin, Villar, Emilie, Labadie, Karine, Cruaud, Corinne, Poulain, Julie, Da Silva, Corinne, Wessner, Marc, Noel, Benjamin, Aury, Jean-Marc, Sunagawa, Shinichi, Acinas, Silvia G., Bork, Peer, Karsenti, Eric, Bowler, Chris, Sardet, Christian, Stemmann, Lars, de Vargas, Colomban, Wincker, Patrick, Lescot, Magali, Babin, Marcel, Gorsky, Gabriel, Grimsley, Nigel, Guidi, Lionel, Hingamp, Pascal, Jaillon, Olivier, Kandels, Stefanie, Iudicone, Daniele, Ogata, Hiroyuki, Pesant, Stéphane, Sullivan, Matthew B., Not, Fabrice, Lee, Karp-Boss, Boss, Emmanuel, Cochrane, Guy, Follows, Michael, Poulton, Nicole, Raes, Jeroen, Sieracki, Mike, Speich, Sabrina, de Vargas, Colomban, Bowler, Chris, Karsenti, Eric, Pelletier, Eric, Wincker, Patrick, Jaillon, Olivier
Published in Cell genomics (11.05.2022)
Published in Cell genomics (11.05.2022)
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Biosynthetic potential of the global ocean microbiome
Paoli, Lucas, Ruscheweyh, Hans-Joachim, Forneris, Clarissa C., Hubrich, Florian, Kautsar, Satria, Bhushan, Agneya, Lotti, Alessandro, Clayssen, Quentin, Salazar, Guillem, Milanese, Alessio, Carlström, Charlotte I., Papadopoulou, Chrysa, Gehrig, Daniel, Karasikov, Mikhail, Mustafa, Harun, Larralde, Martin, Carroll, Laura M., Sánchez, Pablo, Zayed, Ahmed A., Cronin, Dylan R., Acinas, Silvia G., Bork, Peer, Bowler, Chris, Delmont, Tom O., Gasol, Josep M., Gossert, Alvar D., Kahles, André, Sullivan, Matthew B., Wincker, Patrick, Zeller, Georg, Robinson, Serina L., Piel, Jörn, Sunagawa, Shinichi
Published in Nature (London) (07.07.2022)
Published in Nature (London) (07.07.2022)
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Community-led, integrated, reproducible multi-omics with anvi’o
Eren, A. Murat, Kiefl, Evan, Shaiber, Alon, Veseli, Iva, Miller, Samuel E., Schechter, Matthew S., Fink, Isaac, Pan, Jessica N., Yousef, Mahmoud, Fogarty, Emily C., Trigodet, Florian, Watson, Andrea R., Esen, Özcan C., Moore, Ryan M., Clayssen, Quentin, Lee, Michael D., Kivenson, Veronika, Graham, Elaina D., Merrill, Bryan D., Karkman, Antti, Blankenberg, Daniel, Eppley, John M., Sjödin, Andreas, Scott, Jarrod J., Vázquez-Campos, Xabier, McKay, Luke J., McDaniel, Elizabeth A., Stevens, Sarah L. R., Anderson, Rika E., Fuessel, Jessika, Fernandez-Guerra, Antonio, Maignien, Lois, Delmont, Tom O., Willis, Amy D.
Published in Nature microbiology (01.01.2021)
Published in Nature microbiology (01.01.2021)
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The tidyomics ecosystem: enhancing omic data analyses
Hutchison, William J., Keyes, Timothy J., Crowell, Helena L., Serizay, Jacques, Soneson, Charlotte, Davis, Eric S., Sato, Noriaki, Moses, Lambda, Tarlinton, Boyd, Nahid, Abdullah A., Kosmac, Miha, Clayssen, Quentin, Yuan, Victor, Mu, Wancen, Park, Ji-Eun, Mamede, Izabela, Ryu, Min Hyung, Axisa, Pierre-Paul, Paiz, Paulina, Poon, Chi-Lam, Tang, Ming, Gottardo, Raphael, Morgan, Martin, Lee, Stuart, Lawrence, Michael, Hicks, Stephanie C., Nolan, Garry P., Davis, Kara L., Papenfuss, Anthony T., Love, Michael I., Mangiola, Stefano
Published in Nature methods (01.07.2024)
Published in Nature methods (01.07.2024)
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Transient Suppression of Bacterial Populations Associated with Gut Health is Critical in Success of Exclusive Enteral Nutrition for Children with Crohn’s Disease
Runde, Joseph, Veseli, Iva, Fogarty, Emily C, Watson, Andrea R, Clayssen, Quentin, Yosef, Mahmoud, Shaiber, Alon, Verma, Ritu, Quince, Christopher, Gerasimidis, Konstantinos, Rubin, David T, Eren, A Murat
Published in Journal of Crohn's and colitis (05.07.2023)
Published in Journal of Crohn's and colitis (05.07.2023)
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Functional repertoire convergence of distantly related eukaryotic plankton lineages revealed by genome-resolved metagenomics
Delmont, Tom O, Morgan, Gaia, Hinsinger, Damien D, Fremont, Paul, Vanni, Chiara, Antonio Fernandez Guerra, Eren, A Murat, Kourlaiev, Artem, Leo D’agata, Clayssen, Quentin, Villar, Emilie, Labadie, Karine, Cruaud, Corinne, Poulain, Julie, Da Silva, Corinne, Wessner, Marc, Noel, Benjamin, Jean-Marc Aury, Tara Oceans Coordinators, De Vargas, Colomban, Bowler, Chris, Karsenti, Eric, Pelletier, Eric, Wincker, Patrick, Jaillon, Olivier
Published in bioRxiv (23.01.2021)
Published in bioRxiv (23.01.2021)
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The tidyomics ecosystem: Enhancing omic data analyses
Hutchison, William J, Keyes, Timothy J, Crowell, Helena L, Serizay, Jacques, Soneson, Charlotte, Davis, Eric S, Sato, Noriaki, Moses, Lambda, Tarlinton, Boyd, Nahid, Abdullah A, Kosmac, Miha, Clayssen, Quentin, Yuan, Victor, Mu, Wancen, Park, Ji-Eun, Mamede, Izabela, Ryu, Min Hyung, Axisa, Pierre-Paul, Paiz, Paulina, Poon, Chi-Lam, Tang, Ming, Gottardo, Raphael, Morgan, Martin, Lee, Stuart, Lawrence, Michael, Hicks, Stephanie C, Nolan, Garry P, Davis, Kara L, Papenfuss, Anthony T, Love, Michael I, Mangiola, Stefano
Published in bioRxiv (22.05.2024)
Published in bioRxiv (22.05.2024)
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Reference genome-independent taxonomic profiling of microbiomes with mOTUs3
Ruscheweyh, Hans-Joachim, Milanese, Alessio, Paoli, Lucas, Karcher, Nicolai, Clayssen, Quentin, Metzger, Marisa Isabell, Wirbel, Jakob, Bork, Peer, Mende, Daniel, Zeller, Georg, Sunagawa, Shinichi
Published in bioRxiv (08.04.2022)
Published in bioRxiv (08.04.2022)
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Uncharted biosynthetic potential of the ocean microbiome
Paoli, Lucas, Ruscheweyh, Hans-Joachim, neris, Clarissa C, Satria Kautsar, Clayssen, Quentin, Salazar, Guillem, Milanese, Alessio, Gehrig, Daniel, Larralde, Martin, Carroll, Laura, Sanchez, Pablo, Zayed, Ahmed A, Cronin, Dylan R, Acinas, Silvia G, Bork, Peer, Bowler, Chris, Delmont, Tom O, Sullivan, Matthew B, Wincker, Patick, Zeller, Georg, Robinson, Serina L, Piel, Joern, Sunagawa, Shinichi
Published in bioRxiv (24.03.2021)
Published in bioRxiv (24.03.2021)
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