Simple, efficient and thorough shotgun proteomic analysis with PatternLab V
Santos, Marlon D. M., Lima, Diogo B., Fischer, Juliana S. G., Clasen, Milan A., Kurt, Louise U., Camillo-Andrade, Amanda Caroline, Monteiro, Leandro C., de Aquino, Priscila F., Neves-Ferreira, Ana G. C., Valente, Richard H., Trugilho, Monique R. O., Brunoro, Giselle V. F., Souza, Tatiana A. C. B., Santos, Renata M., Batista, Michel, Gozzo, Fabio C., Durán, Rosario, Yates, John R., Barbosa, Valmir C., Carvalho, Paulo C.
Published in Nature protocols (01.07.2022)
Published in Nature protocols (01.07.2022)
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Journal Article
PatternLab V Handles Multiplex Spectra in Shotgun Proteomic Searches and Increases Identification
Clasen, Milan A., Santos, Marlon D. M., Kurt, Louise Ulrich, Fischer, Juliana, Camillo-Andrade, Amanda C., Sales, Lucas Albuquerque, de Arruda Campos Brasil de Souza, Tatiana, Lima, Diogo Borges, Gozzo, Fabio C., Valente, Richard Hemmi, Duran, Rosario, Barbosa, Valmir C., Carvalho, Paulo C.
Published in Journal of the American Society for Mass Spectrometry (05.04.2023)
Published in Journal of the American Society for Mass Spectrometry (05.04.2023)
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Journal Article
Characterizing protein conformers by cross-linking mass spectrometry and pattern recognition
Kurt, Louise U, Clasen, Milan A, Santos, Marlon D M, Lyra, Eduardo S B, Santos, Luana O, Ramos, Carlos H I, Lima, Diogo B, Gozzo, Fabio C, Carvalho, Paulo C
Published in Bioinformatics (Oxford, England) (29.09.2021)
Published in Bioinformatics (Oxford, England) (29.09.2021)
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Journal Article
RawVegetable – A data assessment tool for proteomics and cross-linking mass spectrometry experiments
Kurt, Louise U., Clasen, Milan A., Santos, Marlon D.M., Souza, Tatiana A.C.B., Andreassa, Emanuella C., Lyra, Eduardo B., Lima, Diogo B., Gozzo, Fabio C., Carvalho, Paulo C.
Published in Journal of proteomics (15.08.2020)
Published in Journal of proteomics (15.08.2020)
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Journal Article
Top-Down Garbage Collector: a tool for selecting high-quality top-down proteomics mass spectra
Lima, Diogo B, Silva, André R F, Dupré, Mathieu, Santos, Marlon D M, Clasen, Milan A, Kurt, Louise U, Aquino, Priscila F, Barbosa, Valmir C, Carvalho, Paulo C, Chamot-Rooke, Julia
Published in Bioinformatics (15.09.2019)
Published in Bioinformatics (15.09.2019)
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Journal Article
Mixed-Data Acquisition: Next-Generation Quantitative Proteomics Data Acquisition
Santos, Marlon D.M., Camillo-Andrade, Amanda Caroline, Kurt, Louise U., Clasen, Milan A., Lyra, Eduardo, Gozzo, Fabio C., Batista, Michel, Valente, Richard H., Brunoro, Giselle V.F., Barbosa, Valmir C., Fischer, Juliana S.G., Carvalho, Paulo C.
Published in Journal of proteomics (30.06.2020)
Published in Journal of proteomics (30.06.2020)
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Journal Article
A quantitation module for isotope-labeled peptides integrated into PatternLab for proteomics
Santos, Marlon D.M., Lima, Diogo B., Silva, André R.F., Kurt, Louise U., Clasen, Milan A., Pinto, Antônio F.M., Moresco, James J., Yates, John R., Aquino, Priscila, Barbosa, Valmir C., Fischer, Juliana S.G., Carvalho, Paulo C.
Published in Journal of proteomics (30.06.2019)
Published in Journal of proteomics (30.06.2019)
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Journal Article