Genetic parameters and genotype-by-environment interaction estimates for growth and feed efficiency related traits in Chinook salmon, Oncorhynchus tshawytscha, reared under low and moderate flow regimes
Prescott, Leteisha A, Scholtens, Megan R, Walker, Seumas P, Clarke, Shannon M, Dodds, Ken G, Miller, Matthew R, Semmens, Jayson M, Carter, Chris G, Symonds, Jane E
Published in Genetics selection evolution (Paris) (12.09.2024)
Published in Genetics selection evolution (Paris) (12.09.2024)
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Journal Article
SNPs for parentage testing and traceability in globally diverse breeds of sheep
Heaton, Michael P, Leymaster, Kreg A, Kalbfleisch, Theodore S, Kijas, James W, Clarke, Shannon M, McEwan, John, Maddox, Jillian F, Basnayake, Veronica, Petrik, Dustin T, Simpson, Barry, Smith, Timothy P L, Chitko-McKown, Carol G
Published in PloS one (01.04.2014)
Published in PloS one (01.04.2014)
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Journal Article
Development of Epigenetic Clocks for Key Ruminant Species
Caulton, Alex, Dodds, Ken G, McRae, Kathryn M, Couldrey, Christine, Horvath, Steve, Clarke, Shannon M
Published in Genes (30.12.2021)
Published in Genes (30.12.2021)
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Journal Article
Global Analysis of Transcription Start Sites in the New Ovine Reference Genome ( Oar rambouillet v1.0 )
Salavati, Mazdak, Caulton, Alex, Clark, Richard, Gazova, Iveta, Smith, Timothy P L, Worley, Kim C, Cockett, Noelle E, Archibald, Alan L, Clarke, Shannon M, Murdoch, Brenda M, Clark, Emily L
Published in Frontiers in genetics (23.10.2020)
Published in Frontiers in genetics (23.10.2020)
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Journal Article
Developing Successful Breeding Programs for New Zealand Aquaculture: A Perspective on Progress and Future Genomic Opportunities
Symonds, Jane E, Clarke, Shannon M, King, Nick, Walker, Seumas P, Blanchard, Brian, Sutherland, David, Roberts, Rodney, Preece, Mark A, Tate, Mike, Buxton, Peter, Dodds, Ken G
Published in Frontiers in genetics (01.02.2019)
Published in Frontiers in genetics (01.02.2019)
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Journal Article
Application of Low Coverage Genotyping by Sequencing in Selectively Bred Arctic Charr ( Salvelinus alpinus )
Palaiokostas, Christos, Clarke, Shannon M, Jeuthe, Henrik, Brauning, Rudiger, Bilton, Timothy P, Dodds, Ken G, McEwan, John C, De Koning, Dirk-Jan
Published in G3 : genes - genomes - genetics (01.06.2020)
Published in G3 : genes - genomes - genetics (01.06.2020)
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Journal Article
Salicylate accumulation inhibits growth at chilling temperature in Arabidopsis
Scott, I.M, Clarke, S.M, Wood, J.E, Mur, L.A.J
Published in Plant physiology (Bethesda) (01.06.2004)
Published in Plant physiology (Bethesda) (01.06.2004)
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Journal Article
The Use of “Genotyping-by-Sequencing” to Recover Shared Genealogy in Genetically Diverse Eucalyptus Populations
Klápště, Jaroslav, Ashby, Rachael L., Telfer, Emily J., Graham, Natalie J., Dungey, Heidi S., Brauning, Rudiger, Clarke, Shannon M., Dodds, Ken G.
Published in Forests (01.07.2021)
Published in Forests (01.07.2021)
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Journal Article
Exclusion and Genomic Relatedness Methods for Assignment of Parentage Using Genotyping-by-Sequencing Data
Dodds, Ken G, McEwan, John C, Brauning, Rudiger, van Stijn, Tracey C, Rowe, Suzanne J, McEwan, K Mary, Clarke, Shannon M
Published in G3 : genes - genomes - genetics (01.10.2019)
Published in G3 : genes - genomes - genetics (01.10.2019)
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Journal Article
Genomic Tools for the Identification of Loci Associated with Facial Eczema in New Zealand Sheep
McRae, Kathryn M, Rowe, Suzanne J, Johnson, Patricia L, Baird, Hayley J, Cullen, Neil G, Bixley, Matthew J, Plowman, Jeffrey E, Deb-Choudhury, Santanu, Brauning, Rudiger, Amyes, Neville C, Dodds, Ken G, Newman, Sheryl-Anne N, McEwan, John C, Clarke, Shannon M
Published in Genes (30.09.2021)
Published in Genes (30.09.2021)
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Journal Article
Construction of relatedness matrices using genotyping-by-sequencing data
Dodds, Ken G, McEwan, John C, Brauning, Rudiger, Anderson, Rayna M, van Stijn, Tracey C, Kristjánsson, Theodor, Clarke, Shannon M
Published in BMC genomics (09.12.2015)
Published in BMC genomics (09.12.2015)
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Journal Article
Linkage Disequilibrium Estimation in Low Coverage High-Throughput Sequencing Data
Bilton, Timothy P, McEwan, John C, Clarke, Shannon M, Brauning, Rudiger, van Stijn, Tracey C, Rowe, Suzanne J, Dodds, Ken G
Published in Genetics (Austin) (01.06.2018)
Published in Genetics (Austin) (01.06.2018)
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Journal Article
Assessing accuracy of imputation using different SNP panel densities in a multi-breed sheep population
Ventura, Ricardo V, Miller, Stephen P, Dodds, Ken G, Auvray, Benoit, Lee, Michael, Bixley, Matthew, Clarke, Shannon M, McEwan, John C
Published in Genetics selection evolution (Paris) (23.09.2016)
Published in Genetics selection evolution (Paris) (23.09.2016)
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Journal Article
Estimation of linkage disequilibrium and effective population size in New Zealand sheep using three different methods to create genetic maps
Prieur, Vincent, Clarke, Shannon M, Brito, Luiz F, McEwan, John C, Lee, Michael A, Brauning, Rudiger, Dodds, Ken G, Auvray, Benoît
Published in BMC genetics (21.07.2017)
Published in BMC genetics (21.07.2017)
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Journal Article
Genetic variation in skin traits in New Zealand lambs
McRae, Kathryn M, Cooper, Sue M, McEwan, John C, Anderson, Rayna, Bain, Wendy E, Baird, Hayley J, Dodds, Ken G, Clarke, Shannon M, Pickering, Natalie K, Holmes, Geoff
Published in Journal of the science of food and agriculture (30.08.2022)
Published in Journal of the science of food and agriculture (30.08.2022)
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Journal Article
Genome-wide association study of lung lesions and pleurisy in New Zealand lambs
McRae, Kathryn M, Rowe, Suzanne J, Baird, Hayley J, Bixley, Matthew J, Clarke, Shannon M
Published in Journal of animal science (21.11.2018)
Published in Journal of animal science (21.11.2018)
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Journal Article
Across‐country genomic predictions in Norwegian and New Zealand Composite sheep populations with similar development history
Oliveira, Hinayah Rojas de, McEwan, John C., Jakobsen, Jette H., Blichfeldt, Thor, Meuwissen, Theo H. E., Pickering, Natalie K., Clarke, Shannon M., Brito, Luiz F.
Published in Journal of animal breeding and genetics (1986) (01.01.2022)
Published in Journal of animal breeding and genetics (1986) (01.01.2022)
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Journal Article
Salicylic acid dependent signaling promotes basal thermotolerance but is not essential for acquired thermotolerance in Arabidopsis thaliana
Clarke, Shannon M., Mur, Luis A. J., Wood, Jacqueline E., Scott, Ian M.
Published in The Plant journal : for cell and molecular biology (01.05.2004)
Published in The Plant journal : for cell and molecular biology (01.05.2004)
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