High-throughput and high-efficiency sample preparation for single-cell proteomics using a nested nanowell chip
Woo, Jongmin, Williams, Sarah M., Markillie, Lye Meng, Feng, Song, Tsai, Chia-Feng, Aguilera-Vazquez, Victor, Sontag, Ryan L., Moore, Ronald J., Hu, Dehong, Mehta, Hardeep S., Cantlon-Bruce, Joshua, Liu, Tao, Adkins, Joshua N., Smith, Richard D., Clair, Geremy C., Pasa-Tolic, Ljiljana, Zhu, Ying
Published in Nature communications (29.10.2021)
Published in Nature communications (29.10.2021)
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Journal Article
Three-dimensional feature matching improves coverage for single-cell proteomics based on ion mobility filtering
Woo, Jongmin, Clair, Geremy C., Williams, Sarah M., Feng, Song, Tsai, Chia-Feng, Moore, Ronald J., Chrisler, William B., Smith, Richard D., Kelly, Ryan T., Paša-Tolić, Ljiljana, Ansong, Charles, Zhu, Ying
Published in Cell systems (18.05.2022)
Published in Cell systems (18.05.2022)
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Rat bronchoalveolar lavage proteome changes following e-cigarette aerosol exposures
Day, Nicholas J, Wang, Juan, Johnston, Carl J, Kim, So-Young, Olson, Heather M, House, Emma L, Attah, Isaac Kwame, Clair, Geremy C, Qian, Wei-Jun, McGraw, Matthew D
Published in American journal of physiology. Lung cellular and molecular physiology (01.05.2023)
Published in American journal of physiology. Lung cellular and molecular physiology (01.05.2023)
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Author Correction: High-throughput and high-efficiency sample preparation for single-cell proteomics using a nested nanowell chip
Woo, Jongmin, Williams, Sarah M, Markillie, Lye Meng, Feng, Song, Tsai, Chia-Feng, Aguilera-Vazquez, Victor, Sontag, Ryan L, Moore, Ronald J, Hu, Dehong, Mehta, Hardeep S, Cantlon-Bruce, Joshua, Liu, Tao, Adkins, Joshua N, Smith, Richard D, Clair, Geremy C, Pasa-Tolic, Ljiljana, Zhu, Ying
Published in Nature communications (30.11.2021)
Published in Nature communications (30.11.2021)
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Multi-omics Signature of Candida auris , an Emerging and Multidrug-Resistant Pathogen
Zamith-Miranda, Daniel, Heyman, Heino M, Cleare, Levi G, Couvillion, Sneha P, Clair, Geremy C, Bredeweg, Erin L, Gacser, Attila, Nimrichter, Leonardo, Nakayasu, Ernesto S, Nosanchuk, Joshua D
Published in mSystems (11.06.2019)
Published in mSystems (11.06.2019)
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The Missing Pieces: The Role of Secretion Systems in Campylobacter jejuni Virulence
Gabbert, Amber D, Mydosh, Jennifer L, Talukdar, Prabhat K, Gloss, Lisa M, McDermott, Jason E, Cooper, Kerry K, Clair, Geremy C, Konkel, Michael E
Published in Biomolecules (Basel, Switzerland) (09.01.2023)
Published in Biomolecules (Basel, Switzerland) (09.01.2023)
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Accumulation of Succinyl Coenzyme A Perturbs the Methicillin-Resistant Staphylococcus aureus (MRSA) Succinylome and Is Associated with Increased Susceptibility to Beta-Lactam Antibiotics
Campbell, Christopher, Fingleton, Claire, Zeden, Merve S, Bueno, Emilio, Gallagher, Laura A, Shinde, Dhananjay, Ahn, Jongsam, Olson, Heather M, Fillmore, Thomas L, Adkins, Joshua N, Razvi, Fareha, Bayles, Kenneth W, Fey, Paul D, Thomas, Vinai C, Cava, Felipe, Clair, Geremy C, O’Gara, James P
Published in mBio (29.06.2021)
Published in mBio (29.06.2021)
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Integration of transcriptomic and proteomic data identifies biological functions in cell populations from human infant lung
Du, Yina, Clair, Geremy C, Al Alam, Denise, Danopoulos, Soula, Schnell, Daniel, Kitzmiller, Joseph A, Misra, Ravi S, Bhattacharya, Soumyaroop, Warburton, David, Mariani, Thomas J, Pryhuber, Gloria S, Whitsett, Jeffrey A, Ansong, Charles, Xu, Yan
Published in American journal of physiology. Lung cellular and molecular physiology (01.09.2019)
Published in American journal of physiology. Lung cellular and molecular physiology (01.09.2019)
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Amylases in the Human Vagina
Nunn, Kenetta L, Clair, Geremy C, Adkins, Joshua N, Engbrecht, Kristin, Fillmore, Thomas, Forney, Larry J
Published in mSphere (09.12.2020)
Published in mSphere (09.12.2020)
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Evaluating Linear Ion Trap for MS3-Based Multiplexed Single-Cell Proteomics
Park, Junho, Yu, Fengchao, Fulcher, James M., Williams, Sarah M., Engbrecht, Kristin, Moore, Ronald J., Clair, Geremy C., Petyuk, Vladislav, Nesvizhskii, Alexey I., Zhu, Ying
Published in Analytical chemistry (Washington) (24.01.2023)
Published in Analytical chemistry (Washington) (24.01.2023)
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Guiding the choice of informatics software and tools for lipidomics research applications
Ni, Zhixu, Wölk, Michele, Jukes, Geoff, Mendivelso Espinosa, Karla, Ahrends, Robert, Aimo, Lucila, Alvarez-Jarreta, Jorge, Andrews, Simon, Andrews, Robert, Bridge, Alan, Clair, Geremy C, Conroy, Matthew J, Fahy, Eoin, Gaud, Caroline, Goracci, Laura, Hartler, Jürgen, Hoffmann, Nils, Kopczyinki, Dominik, Korf, Ansgar, Lopez-Clavijo, Andrea F, Malik, Adnan, Ackerman, Jacobo Miranda, Molenaar, Martijn R, O'Donovan, Claire, Pluskal, Tomáš, Shevchenko, Andrej, Slenter, Denise, Siuzdak, Gary, Kutmon, Martina, Tsugawa, Hiroshi, Willighagen, Egon L, Xia, Jianguo, O'Donnell, Valerie B, Fedorova, Maria
Published in Nature methods (01.02.2023)
Published in Nature methods (01.02.2023)
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Exploring new frontiers in type 1 diabetes through advanced mass-spectrometry-based molecular measurements
Sarkar, Soumyadeep, Zheng, Xueyun, Clair, Geremy C., Kwon, Yu Mi, You, Youngki, Swensen, Adam C., Webb-Robertson, Bobbie-Jo M., Nakayasu, Ernesto S., Qian, Wei-Jun, Metz, Thomas O.
Published in Trends in molecular medicine (15.08.2024)
Published in Trends in molecular medicine (15.08.2024)
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Viral afterlife: SARS-CoV-2 as a reservoir of immunomimetic peptides that reassemble into proinflammatory supramolecular complexes
Zhang, Yue, Bharathi, Vanthana, Dokoshi, Tatsuya, de Anda, Jaime, Ursery, Lauryn Tumey, Kulkarni, Nikhil N, Nakamura, Yoshiyuki, Chen, Jonathan, Luo, Elizabeth W C, Wang, Lamei, Xu, Hua, Coady, Alison, Zurich, Raymond, Lee, Michelle W, Matsui, Tsutomu, Lee, HongKyu, Chan, Liana C, Schepmoes, Athena A, Lipton, Mary S, Zhao, Rui, Adkins, Joshua N, Clair, Geremy C, Thurlow, Lance R, Schisler, Jonathan C, Wolfgang, Matthew C, Hagan, Robert S, Yeaman, Michael R, Weiss, Thomas M, Chen, Xinhua, Li, Melody M H, Nizet, Victor, Antoniak, Silvio, Mackman, Nigel, Gallo, Richard L, Wong, Gerard C L
Published in Proceedings of the National Academy of Sciences - PNAS (06.02.2024)
Published in Proceedings of the National Academy of Sciences - PNAS (06.02.2024)
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LungMAP Portal Ecosystem: Systems-level Exploration of the Lung
Gaddis, Nathan, Fortriede, Joshua, Guo, Minzhe, Bardes, Eric E, Kouril, Michal, Tabar, Scott, Burns, Kevin, Ardini-Poleske, Maryanne E, Loos, Stephanie, Schnell, Daniel, Jin, Kang, Iyer, Balaji, Du, Yina, Huo, Bing-Xing, Bhattacharjee, Anukana, Korte, Jeff, Munshi, Ruchi, Smith, Victoria, Herbst, Andrew, Kitzmiller, Joseph A, Clair, Geremy C, Carson, James P, Adkins, Joshua, Morrisey, Edward E, Pryhuber, Gloria S, Misra, Ravi, Whitsett, Jeffrey A, Sun, Xin, Heathorn, Trevor, Paten, Benedict, Prasath, V B Surya, Xu, Yan, Tickle, Tim, Aronow, Bruce J, Salomonis, Nathan
Published in American journal of respiratory cell and molecular biology (01.02.2024)
Published in American journal of respiratory cell and molecular biology (01.02.2024)
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New Insights into the Natural History of Bronchopulmonary Dysplasia from Proteomics and Multiplexed Immunohistochemistry
Dylag, Andrew M, Misra, Ravi S, Bandyopadhyay, Gautam, Poole, Cory, Huyck, Heidie L, Jehrio, Matthew G, Haak, Jeannie, Deutsch, Gail H, Dvorak, Carly, Olson, Heather M, Paurus, Vanessa, Katzman, Philip, Woo, Jongmin, Purkerson, Jeffrey M, Adkins, Joshua N, Mariani, Thomas J, Clair, Geremy C, Pryhuber, Gloria S
Published in American journal of physiology. Lung cellular and molecular physiology (01.10.2023)
Published in American journal of physiology. Lung cellular and molecular physiology (01.10.2023)
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Redeploying β-Lactam Antibiotics as a Novel Antivirulence Strategy for the Treatment of Methicillin-Resistant Staphylococcus aureus Infections
Waters, Elaine M., Rudkin, Justine K., Coughlan, Simone, Clair, Geremy C., Adkins, Joshua N., Gore, Suzanna, Xia, Guoqing, Black, Nikki S., Downing, Tim, O'Neill, Eoghan, Kadioglu, Aras, O'Gara, James P.
Published in The Journal of infectious diseases (01.01.2017)
Published in The Journal of infectious diseases (01.01.2017)
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Chymotrypsin-like Elastase-1 Mediates Progressive Emphysema in Alpha-1 Antitrypsin Deficiency
Devine, Andrew J, Smith, Noah J, Joshi, Rashika, Fan, Qiang, Borchers, Michael T, Clair, Geremy C, Adkins, Joshua N, Varisco, Brian M
Published in Chronic obstructive pulmonary diseases (01.01.2023)
Published in Chronic obstructive pulmonary diseases (01.01.2023)
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Alterations of the skeletal muscle nuclear proteome after acute exercise reveals a post-transcriptional influence
Martin, Ryan A, Viggars, Mark R, Sanford, James A, Taylor, Zane W, Hansen, Joshua R, Clair, Geremy C, Adkins, Joshua N, Douglas, Collin M, Esser, Karyn A
Published in bioRxiv (09.08.2024)
Published in bioRxiv (09.08.2024)
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Guiding the choice of informatics software and tools for lipidomics biomedical research applications
Ni, Zhixu, Wölk, Michele, Jukes, Geoff, Espinosa, Karla Mendivelso, Ahrends, Robert, Aimo, Lucila, Alvarez-Jarreta, Jorge, Andrews, Simon, Bridge, Alan, Clair, Geremy C, Conroy, Matthew J, Fahy, Eoin, Gaud, Caroline, Goracci, Laura, Hartler, Jürgen, Hoffmann, Nils, Kopczyinki, Dominik, Korf, Ansgar, Lopez-Clavijo, Andrea F., Malik, Adnan, Ackerman, Jacobo Miranda, Molenaar, Martijn R, O’Donovan, Claire, Pluskal, Tomáš, Shevchenko, Andrej, Slenter, Denise, Siuzdak, Gary, Kutmon, Martina, Tsugawa, Hiroshi, Willighagen, Egon L, Xia, Jianguo, O’Donnell, Valerie B, Fedorova, Maria
Published in Nature methods (21.12.2022)
Published in Nature methods (21.12.2022)
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Campylobacter jejuni Demonstrates Conserved Proteomic and Transcriptomic Responses When Co-cultured With Human INT 407 and Caco-2 Epithelial Cells
Negretti, Nicholas M, Clair, Geremy, Talukdar, Prabhat K, Gourley, Christopher R, Huynh, Steven, Adkins, Joshua N, Parker, Craig T, Corneau, Colby M, Konkel, Michael E
Published in Frontiers in microbiology (11.04.2019)
Published in Frontiers in microbiology (11.04.2019)
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