Diversity of bifidobacteria within the infant gut microbiota
Turroni, Francesca, Peano, Clelia, Pass, Daniel A, Foroni, Elena, Severgnini, Marco, Claesson, Marcus J, Kerr, Colm, Hourihane, Jonathan, Murray, Deirdre, Fuligni, Fabio, Gueimonde, Miguel, Margolles, Abelardo, De Bellis, Gianluca, O'Toole, Paul W, van Sinderen, Douwe, Marchesi, Julian R, Ventura, Marco
Published in PloS one (11.05.2012)
Published in PloS one (11.05.2012)
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Journal Article
Applications of Machine Learning in Human Microbiome Studies: A Review on Feature Selection, Biomarker Identification, Disease Prediction and Treatment
Marcos-Zambrano, Laura Judith, Karaduzovic-Hadziabdic, Kanita, Loncar Turukalo, Tatjana, Przymus, Piotr, Trajkovik, Vladimir, Aasmets, Oliver, Berland, Magali, Gruca, Aleksandra, Hasic, Jasminka, Hron, Karel, Klammsteiner, Thomas, Kolev, Mikhail, Lahti, Leo, Lopes, Marta B, Moreno, Victor, Naskinova, Irina, Org, Elin, Paciência, Inês, Papoutsoglou, Georgios, Shigdel, Rajesh, Stres, Blaz, Vilne, Baiba, Yousef, Malik, Zdravevski, Eftim, Tsamardinos, Ioannis, Carrillo de Santa Pau, Enrique, Claesson, Marcus J, Moreno-Indias, Isabel, Truu, Jaak
Published in Frontiers in microbiology (19.02.2021)
Published in Frontiers in microbiology (19.02.2021)
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Journal Article
Comparative analysis of pyrosequencing and a phylogenetic microarray for exploring microbial community structures in the human distal intestine
Claesson, M.J, O'Sullivan, O, Wang, Q, Nikkilä, J, Marchesi, J.R, Smidt, H, Vos, W.M. de, Ross, R.P, O'Toole, P.W
Published in PloS one (20.08.2009)
Published in PloS one (20.08.2009)
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Journal Article
Gut microbiome, big data and machine learning to promote precision medicine for cancer
Cammarota, Giovanni, Ianiro, Gianluca, Ahern, Anna, Carbone, Carmine, Temko, Andriy, Claesson, Marcus J., Gasbarrini, Antonio, Tortora, Giampaolo
Published in Nature reviews. Gastroenterology & hepatology (01.10.2020)
Published in Nature reviews. Gastroenterology & hepatology (01.10.2020)
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Journal Article
A clinician's guide to microbiome analysis
Claesson, Marcus J., Clooney, Adam G., O'Toole, Paul W.
Published in Nature reviews. Gastroenterology & hepatology (01.10.2017)
Published in Nature reviews. Gastroenterology & hepatology (01.10.2017)
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Journal Article
Tumour-associated and non-tumour-associated microbiota in colorectal cancer
Flemer, Burkhardt, Lynch, Denise B, Brown, Jillian M R, Jeffery, Ian B, Ryan, Feargal J, Claesson, Marcus J, O'Riordain, Micheal, Shanahan, Fergus, O'Toole, Paul W
Published in Gut (01.04.2017)
Published in Gut (01.04.2017)
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Journal Article
SPINGO: a rapid species-classifier for microbial amplicon sequences
Allard, Guy, Ryan, Feargal J, Jeffery, Ian B, Claesson, Marcus J
Published in BMC bioinformatics (08.10.2015)
Published in BMC bioinformatics (08.10.2015)
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Journal Article
Comparison of two next-generation sequencing technologies for resolving highly complex microbiota composition using tandem variable 16S rRNA gene regions
Claesson, Marcus J, Wang, Qiong, O'Sullivan, Orla, Greene-Diniz, Rachel, Cole, James R, Ross, R. Paul, O'Toole, Paul W
Published in Nucleic acids research (01.12.2010)
Published in Nucleic acids research (01.12.2010)
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Journal Article
Ranking microbiome variance in inflammatory bowel disease: a large longitudinal intercontinental study
Clooney, Adam G, Eckenberger, Julia, Laserna-Mendieta, Emilio, Sexton, Kathryn A, Bernstein, Matthew T, Vagianos, Kathy, Sargent, Michael, Ryan, Feargal J, Moran, Carthage, Sheehan, Donal, Sleator, Roy D, Targownik, Laura E, Bernstein, Charles N, Shanahan, Fergus, Claesson, Marcus J
Published in Gut (01.03.2021)
Published in Gut (01.03.2021)
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Journal Article
Diversity of bacteria populations associated with different thallus regions of the brown alga Laminaria digitata
Ihua, Maureen W, FitzGerald, Jamie A, Guihéneuf, Freddy, Jackson, Stephen A, Claesson, Marcus J, Stengel, Dagmar B, Dobson, Alan D W
Published in PloS one (25.11.2020)
Published in PloS one (25.11.2020)
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Journal Article
Categorization of the gut microbiota: enterotypes or gradients?
Jeffery, Ian B., Claesson, Marcus J., O'Toole, Paul W., Shanahan, Fergus
Published in Nature reviews. Microbiology (01.09.2012)
Published in Nature reviews. Microbiology (01.09.2012)
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Journal Article
Gut microbiota: Changes throughout the lifespan from infancy to elderly
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Journal Article
Conference Proceeding
Microbes & neurodevelopment – Absence of microbiota during early life increases activity-related transcriptional pathways in the amygdala
Stilling, Roman M, Ryan, Feargal J, Hoban, Alan E, Shanahan, Fergus, Clarke, Gerard, Claesson, Marcus J, Dinan, Timothy G, Cryan, John F
Published in Brain, behavior, and immunity (01.11.2015)
Published in Brain, behavior, and immunity (01.11.2015)
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Journal Article
Composition, variability, and temporal stability of the intestinal microbiota of the elderly
Claesson, Marcus J, Cusack, Siobhán, O'Sullivan, Orla, Greene-Diniz, Rachel, de Weerd, Heleen, Flannery, Edel, Marchesi, Julian R, Falush, Daniel, Dinan, Timothy, Fitzgerald, Gerald, Stanton, Catherine, van Sinderen, Douwe, O'Connor, Michael, Harnedy, Norma, O'Connor, Kieran, Henry, Colm, O'Mahony, Denis, Fitzgerald, Anthony P, Shanahan, Fergus, Twomey, Cillian, Hill, Colin, Ross, R. Paul, O'Toole, Paul W
Published in Proceedings of the National Academy of Sciences - PNAS (15.03.2011)
Published in Proceedings of the National Academy of Sciences - PNAS (15.03.2011)
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Journal Article
An irritable bowel syndrome subtype defined by species-specific alterations in faecal microbiota
Jeffery, Ian B, O'Toole, Paul W, Öhman, Lena, Claesson, Marcus J, Deane, Jennifer, Quigley, Eamonn M M, Simrén, Magnus
Published in Gut (01.07.2012)
Published in Gut (01.07.2012)
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Journal Article
The Athlete Gut Microbiome and its Relevance to Health and Performance: A Review
O’Brien, Marcus T., O’Sullivan, Orla, Claesson, Marcus J., Cotter, Paul D.
Published in Sports medicine (Auckland) (01.12.2022)
Published in Sports medicine (Auckland) (01.12.2022)
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Journal Article
Paediatric Inflammatory Bowel Disease and its Relationship with the Microbiome
Fitzgerald, Rachel S., Sanderson, Ian R., Claesson, Marcus J.
Published in Microbial ecology (01.11.2021)
Published in Microbial ecology (01.11.2021)
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Journal Article
Piphillin predicts metagenomic composition and dynamics from DADA2-corrected 16S rDNA sequences
Narayan, Nicole R, Weinmaier, Thomas, Laserna-Mendieta, Emilio J, Claesson, Marcus J, Shanahan, Fergus, Dabbagh, Karim, Iwai, Shoko, DeSantis, Todd Z
Published in BMC genomics (17.01.2020)
Published in BMC genomics (17.01.2020)
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